| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3715 |
|---|
| Symbol | engB |
|---|
| ID | 4921072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 4421920 |
|---|
| End bp | 4422576 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640165337 |
|---|
| Product | ribosome biogenesis GTP-binding protein YsxC |
|---|
| Protein accession | YP_001095840 |
|---|
| Protein GI | 127514643 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0218] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03598] ribosome biogenesis GTP-binding protein YsxC/EngB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000678614 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTGATT CTCGTATCGA TTTTCGACAG GCCAAGTTTT TGATCAGTGC GCCGGATATT
GCGCATCTGG ATGAGCACTT GCCCGGTGAT GTAGGCGTCG AAATCGCCTT TGCCGGCCGC
TCTAATGCCG GAAAGTCGAG CGCATTAAAC CAATTAACCG AGCAGAAGAA CCTGGCAAGA
ACCAGTAAGA CACCTGGGCG TACCCAGTTG ATCAACGTCT TCGCGCTCGA TGAGCACAGA
CGCCTGGTGG ATTTGCCTGG CTATGGTTTC GCTCAGGTAC CGCTGGCCAT GAAGAAAAAA
TGGCAGCAGG CGCTGGGGCA ATATCTGCAG GAACGCGCCT GTTTGAGTGG CCTGGTCGTG
CTGATGGACA TTCGTCATCC CCTCAAGGAT CTCGACATGC AGATGATCGA GTGGGCGGTG
GATTGCGATA TTCCCGTGCT TGCCTTGCTG ACCAAGTGTG ACAAGTTGGC GCAGAGTGCT
CGAATGAAGA CGGTTAACGA TGTGCGTAAG GCCTTGGCGG ATTTTGGCGA CGGCGTGAAG
GTGGAGCCAT TTTCTTCCTT GAAGGGAACC GGCAAGCCTA AGGTGCTGGG GATTCTTAAC
GAATGGTGTC ATCCAGATTG GCTGGTGGAA GCCTTAGCCG ACGCCGAACA AGAGTAA
|
|---|
| Protein sequence | MTDSRIDFRQ AKFLISAPDI AHLDEHLPGD VGVEIAFAGR SNAGKSSALN QLTEQKNLAR
TSKTPGRTQL INVFALDEHR RLVDLPGYGF AQVPLAMKKK WQQALGQYLQ ERACLSGLVV
LMDIRHPLKD LDMQMIEWAV DCDIPVLALL TKCDKLAQSA RMKTVNDVRK ALADFGDGVK
VEPFSSLKGT GKPKVLGILN EWCHPDWLVE ALADAEQE
|
|---|
| |