Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3710 |
Symbol | tdh |
ID | 4921222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4414940 |
End bp | 4415965 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640165332 |
Product | L-threonine 3-dehydrogenase |
Protein accession | YP_001095835 |
Protein GI | 127514638 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.187743 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCT TAAGCAAACT CAAGCCTGAA GAAGGCATCT GGATGGTTGA TGCGCCAAAA CCTGAAGTTG GCCACAACGA TCTGCTGATC AAAATACGTA AGACCGCCAT CTGCGGTACC GACGTGCATA TCTACAACTG GGATGAGTGG TCACAAAACA CCATTCCAGT GCCTATGGTA GTCGGCCACG AATATGTGGG CGAAGTGGTC GAGATTGGTC AGGAAGTCCG TGGCTTCCAG ATTGGCGATC GCGTCTCTGG CGAAGGTCAT ATCACCTGTG GCCACTGCCG CAATTGCCGC GCGGGCCGCA CTCACCTGTG CCGCAATACC TCTGGTGTGG GTGTTAACCG CGAAGGTGCC TTTGCCGAAT ACCTGGTGAT CCCTGCCTTC AACGCCTTCA AGATCCCTGA CGATATCTCT GACGATCTGG CTTCTATTTT CGATCCTTTC GGTAACGCGG TGCACACGGC ACTGTCGTTC GACTTGGTCG GCGAAGATGT GCTGATCACA GGTGCAGGCC CTATCGGCAT CATGGCCGCC GCAGTTTGTC GCCATGTCGG CGCACGCCAC GTGGTGATCA CAGACGTGAA CGAATACCGC CTCGAGCTGG CCAAGAAGAT GGGCGCCACC CGCGCCGTTA ACGTGGCCAA GGAGAAGCTG GAAGATGTGA TGCAAGATCT CGGCATGACT GAAGGCTTCG ATGTGGGCCT TGAGATGTCG GGCGTGCCAG CAGCCTTCCA CTCCATGCTG GATACCATGA ACCACGGCGG TAAGATCGCC ATGCTGGGTA TTCCTGGCGG CGACATGGCC ATCGACTGGA GCAAGGTGAT CTTCAAGGGA CTCATCATCA AAGGGATCTA CGGCCGTGAG ATGTTTGAAA CCTGGTACAA GATGGCCAGC CTGATCCAAT CGGGTCTGGA TATCTCGCCA ATCATCACAC ATCACTACAA TGTCGATGAT TTCCAAGCCG GTTTCGACGC CATGCGCTCG GGCCAATCGG GCAAGGTGAT CCTCAGCTGG GATTAA
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Protein sequence | MKALSKLKPE EGIWMVDAPK PEVGHNDLLI KIRKTAICGT DVHIYNWDEW SQNTIPVPMV VGHEYVGEVV EIGQEVRGFQ IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNREGA FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA AVCRHVGARH VVITDVNEYR LELAKKMGAT RAVNVAKEKL EDVMQDLGMT EGFDVGLEMS GVPAAFHSML DTMNHGGKIA MLGIPGGDMA IDWSKVIFKG LIIKGIYGRE MFETWYKMAS LIQSGLDISP IITHHYNVDD FQAGFDAMRS GQSGKVILSW D
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