Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3677 |
Symbol | |
ID | 4921761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4380196 |
End bp | 4381554 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640165299 |
Product | isochorismate synthase |
Protein accession | YP_001095802 |
Protein GI | 127514605 |
COG category | [H] Coenzyme transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1169] Isochorismate synthase |
TIGRFAM ID | [TIGR00543] isochorismate synthases |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGCGTTT CCTCGCTGCC ACAGGCCATA CAATCCTTAT CCCGCAAACT CGAAAAACTC GACATACACC CCCAGGGTGA GCCGATCATT CAGTTGTCGG TGACGGCCTG TGTAATGCCG ATGATCGCCT GGATCGCCAG CCAACCTTGT TATCCCAGGA TCTACTGGCA TGGCCGCGAC ACCCAGGAAG AGGTCGCCGC TCTGGGGTGC TGTAAAGATT TCATCTTCGA AGATGCGGTA GACGACAACC AGCTTTCCCA GGCCTATCAG ACCCAGAGGT CACTCTCGAC CAACCAGGAG ATACGCTACT ACGGCGGCGT CGCCTTCGAT CGTCATACCG AGTGCTGGCC CGAGTATGGC CGCGCCCATT TCATCCTGCC CAGGGTCGAG CTGAGACGCA GTGGCGATGA ATACAAGCTG CTGGTCAACC TCAATGTCGA ATCCGGCGAT ATCGAGCAGG AGCGTAACCT GGCGCTGCAG GCCCTCGCCG CTTTGGTACC ACCCAAGCCG CTGGCGCCAC CGAACAAGAT CCAGCTGCTG AGTCGCAGCG ATCGTCCCAA CAAGCTGCGC TGGCACGAGC TGGTCAACCA GGTCACCCAT GACAGGTTTA TTCAAGATAC GCCTAAGGTG GTGCTGTCAC GTCTGACGCA ACTTGAGGTG AACGAGAAGG TGGATCCCTG GATGCTGCTG GCCAGCTGGC AGGGTCGCAA CCAGAACAGT TTTCAATTTG GCTTTCAGTT CAGCCCGGAG AGCGCCTTTA TCTCCTGCAC GCCGGAGCGT CTCTACCGAC GTCGCCAGCG CGAGGTATTT ACCGAGGCCT TAGCGGGCAC CACCACACGC GGACTCAACG AGGCCGAAGA TGCCATGCTG GCGCAGCAGT TGCTGGACGA CACCAAGAAC AGCCATGAGA ACCAGCTGGT GCGCGAGCAT ATCGTCGATG CCCTGACCCC ACTGAGCAAC TATGTGGGCG CCGACGAGCT GGCCAAGGTG TTTAAGCTGA GCCACATCCA GCATCTACAC AGAGCCATTC GCGCCGAACT CAAGCCTGGG GTGAACGATT TTCAGATCCT GCAGGCCCTG CACCCCACCC CTGCCGTGGG CGGCCTGCCA AAGGCTTCAG CCATCAACTT TATTCGCCAG CGAGAAGGCT ACACCCGTGG CTGGTATGCC GGTGCCTGTG GCTACTTCAA CAAGTATGAG AGCGAGTTTG CGGTGGCGAT TCGTAGTGCG CTGATCGAAC CCGGACGCAT CAACTTGTTT GCCGGTGCGG GGATCGTCTC GGGCTCTGAG GCCGAGGCGG AATGGAACGA GCTGGAGAAT AAGCTCAAGA CCATAATGTC GATCCTGACA GAGGTCTAG
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Protein sequence | MSVSSLPQAI QSLSRKLEKL DIHPQGEPII QLSVTACVMP MIAWIASQPC YPRIYWHGRD TQEEVAALGC CKDFIFEDAV DDNQLSQAYQ TQRSLSTNQE IRYYGGVAFD RHTECWPEYG RAHFILPRVE LRRSGDEYKL LVNLNVESGD IEQERNLALQ ALAALVPPKP LAPPNKIQLL SRSDRPNKLR WHELVNQVTH DRFIQDTPKV VLSRLTQLEV NEKVDPWMLL ASWQGRNQNS FQFGFQFSPE SAFISCTPER LYRRRQREVF TEALAGTTTR GLNEAEDAML AQQLLDDTKN SHENQLVREH IVDALTPLSN YVGADELAKV FKLSHIQHLH RAIRAELKPG VNDFQILQAL HPTPAVGGLP KASAINFIRQ REGYTRGWYA GACGYFNKYE SEFAVAIRSA LIEPGRINLF AGAGIVSGSE AEAEWNELEN KLKTIMSILT EV
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