| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3613 |
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| Symbol | |
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| ID | 4922399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4310779 |
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| End bp | 4311558 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640165235 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_001095738 |
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| Protein GI | 127514541 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCTTAA GCAAGACTAA GCGGGCACAG GGCTTTACCC TGCTGGAGAT GCTGATCGCC
ATCGCCATCT TTGCCATGCT GGGGTTGGCG GCGAATGCCG TGCTCAGCAC AGTAATGAAA
AACGATGAGG TCACCGCCGA GTTTGCCCAG CGACTCAAGT CGTTGCAACA GGGCTTCGGT
GCCCTGGAGC GGGATTTTGG CCAGATGGTG GCCCGTACTC CGCGTCTGTT AGAAGGCGGG
CGTGGCTCGA CCGTGATTCA GACCGGCAAA GATCTGTTCG ATTCAGAGTC TGAGGCCATC
GTCTTCTACC GTATCGGCTG GTTGAATCCT GACGGGCTCT TGCCCAGAGG CAGCCTGCAG
TCGGTGGCCT ATGTGGTACA GGAAAACAAC CTGGAGCGTT GGTATTTTCC CTATCCCGAG
CCGGAGTTTG GCGCCGAGCC GATTAAGACT GTGGTGATTA AAAATGTCCT CTCTGTGGAG
TATTCCTTCT ATGTCGAGGA CAAATGGCAG CGTAAGTTTG ATGCCACTAG CCTGCCCAAG
GCGATCGCCA TGGAAATTGA GGTGGAAGGC CTGGGTAAGG TACAGCGCAA GTTCCTGTTA
CCTTTGGGCG CTATGCTGAG TGAAAATGGC TCGGGCAACA ATAACGGTAA TAACAACGGC
AACAATAACG GCAATAACAA CGGCAGCAAT AACGGTAATA ACGGTGGCAA CAACTCCGGC
GGCAACAGCG ACGGAGGTAA AGATGGCGGT TCCGGTGGCA AGGAAGATGA CGATGAATAG
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| Protein sequence | MCLSKTKRAQ GFTLLEMLIA IAIFAMLGLA ANAVLSTVMK NDEVTAEFAQ RLKSLQQGFG
ALERDFGQMV ARTPRLLEGG RGSTVIQTGK DLFDSESEAI VFYRIGWLNP DGLLPRGSLQ
SVAYVVQENN LERWYFPYPE PEFGAEPIKT VVIKNVLSVE YSFYVEDKWQ RKFDATSLPK
AIAMEIEVEG LGKVQRKFLL PLGAMLSENG SGNNNGNNNG NNNGNNNGSN NGNNGGNNSG
GNSDGGKDGG SGGKEDDDE
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