| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3606 |
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| Symbol | |
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| ID | 4922511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4304363 |
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| End bp | 4306048 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165228 |
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| Product | signal recognition particle-docking protein FtsY |
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| Protein accession | YP_001095731 |
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| Protein GI | 127514534 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0552] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00455766 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAA AAGGTTTTTT TTCTTGGTTC CGCAAAGATA AATCTAAGCA GGAAGCGGCG
GCACCAGAAG TAGAAGTTTC GACCCAGGCA GATGCCGAAC AGGCTAGCGT CGAAGAAGAT
AATGCACGTC TGGCTGCCGA GCAGGCAGAG CAGGAATGCC TAGCCGAGGA GCAGGCCCGT
ATTGAAGCGG AAAATGCCCG TCTCGAAGCA GAGAGTGAGC GCCTGGCTGC GGAACAAGCT
GAGCAGCAGC GTATAGCCGC CGAGCAGGCT GAGCAGCAAC GCCTTGCCGA GGAGCAGGCT
CGCATCGAAG TTGAGAATGC CCGTCAAGCT GCCGAGCAGG CCCGTCTCGA AGCAGAGAGT
GAGCGCCTAG CTGCCGAACA AGCTGAGCAG GAGCGTCTAG CTGCGGAGCA GGCTGAGCAG
CAACGCATCG CCGAGGAGCA GGCCCGCGTC GAAACGGAGA ATGCTCGTCA AGCCGCCGAA
CAGGCCCGTC TTGAAGCAGA GAGTGAGCGC CTAGCTGCCG AGCAGGCTGA GCAGCAACGT
CTAGCCGATG AACAGGCCCG CGTCGAGGCA GAGAATGCCC GCCTGGCAGC GGAAAAGGCT
GAGCAAGAAC GCCTTGCAGC CGAACAAGCT GAGCAGCAAC GCATAGCTGA AGAGCAGGCT
CGCGTCGAAG AGGAGAATGC CCGTCTGGCA GCAGAACAGG CAGGGCAAGA GGAGCAGGTT
GAACAACAGC CCGAGCCGCA GCAGAAGCCG ACCAAAGAGG GTTTCTTTGC TCGCCTGAAA
CGCGGACTGA AGCGCACCAG CGAGAATATC GGTAGTGGCT TCATCGGCCT GTTCAAGGGC
AAGAAGATCG ATGATGAGCT GTTCGAAGAG TTGGAAGAGC AGCTGTTGAT CGCCGATGTG
GGGGTAGAAA CCACCAGTCG CCTTATCGCC AGCCTGACAG AGCAGGCAAG CCGTAAGCAG
CTTAAAGATG GCGAGGCCCT CTATGAGCTG ATGCGTGAAG AGATGCAGAA GACCTTGGAG
CCAGTGAGCA TTCCTCTGGT GCCGGAAAAC AGCGAAGGAC CTTTCGTTAT CCTTATGGTC
GGCGTCAACG GCGTGGGTAA GACCACCACT ATCGGTAAGC TGGCCAAGCA GTATCAACAG
CAGGGCAAGT CGGTGATGTT GGCGGCGGGT GACACCTTCC GCGCCGCGGC CGTCGAGCAA
CTGCAGGTCT GGGGTCAGCG CAACGATATT CCAGTGATCG CCCAGCACAC AGGCGCAGAC
AGTGCCTCGG TACTGTTCGA TGCGCTGCAG GCGGCGCGTG CCCGTAAGAT AGACATCTTG
ATCGCCGATA CGGCGGGACG CCTACAGAAC AAGGCCCATC TGATGGATGA GCTGAAGAAA
GTAGTGCGTG TGATGAAGAA ACAAGATGAG AGCGCCCCGC ACGAGGTGAT GTTGACCCTG
GATGCGAGTA CGGGTCAGAA TGCCATTAGC CAGGCGCAGC TGTTCAAAGA AGCCGTTGGC
GTCACGGGTA TCACCATGAG CAAGCTCGAT GGCACGGCCA AGGGCGGTGT GATCTTCGCC
ATTGCAGATA AATTTGGCAT ACCAATTAGA CACATAGGTG TCGGTGAGCA GATTGACGAT
CTAAGGCCTT TCGATGCGAA AGACTTTATC GATGCCCTGT TCAGCCATGA GGATGAGGCC
AAGTAG
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| Protein sequence | MAKKGFFSWF RKDKSKQEAA APEVEVSTQA DAEQASVEED NARLAAEQAE QECLAEEQAR
IEAENARLEA ESERLAAEQA EQQRIAAEQA EQQRLAEEQA RIEVENARQA AEQARLEAES
ERLAAEQAEQ ERLAAEQAEQ QRIAEEQARV ETENARQAAE QARLEAESER LAAEQAEQQR
LADEQARVEA ENARLAAEKA EQERLAAEQA EQQRIAEEQA RVEEENARLA AEQAGQEEQV
EQQPEPQQKP TKEGFFARLK RGLKRTSENI GSGFIGLFKG KKIDDELFEE LEEQLLIADV
GVETTSRLIA SLTEQASRKQ LKDGEALYEL MREEMQKTLE PVSIPLVPEN SEGPFVILMV
GVNGVGKTTT IGKLAKQYQQ QGKSVMLAAG DTFRAAAVEQ LQVWGQRNDI PVIAQHTGAD
SASVLFDALQ AARARKIDIL IADTAGRLQN KAHLMDELKK VVRVMKKQDE SAPHEVMLTL
DASTGQNAIS QAQLFKEAVG VTGITMSKLD GTAKGGVIFA IADKFGIPIR HIGVGEQIDD
LRPFDAKDFI DALFSHEDEA K
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