| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3585 |
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| Symbol | |
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| ID | 4922553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 4281680 |
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| End bp | 4283785 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640165207 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001095710 |
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| Protein GI | 127514513 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCCTT GGTTTACCTT ATTGGCGCAG CTTCGCAGCG CACAGCCTGA GATTCAGCGG
CAACTCGACA GTTGGCGCCA GGATGAGTGC GCTTACCTAG CCGTTCTCAA GGGACACGCC
TTCATAGGGG CCAGTCAGGG TACGCTGGAT TATTTCGACA CCCAGCGCGA CAGCTTCATC
ACGGCCACCC CCTACGACTT CTCCCCAAGG ATCCAGGCCA GCGGCATCAA CAGCATAGAG
GTGGCGCAGC AGCTGATCGA ACGCGTCCAT CAGGGCGAGG TGGTCAGCAT CAACTGGCTG
CACATGAGCC AACTGGGACG TGAACTCCCC ACCAAGGTCA CCATGTTGCC GGCAGATCAT
GAGGGCAGCC AGGTGATATT GGCGCGTTTC GACCCCGCCG ATCGCAGGGC TAAACGGCGC
GAGACGGTAT CCAACGGATT CGATCGCCTG CCGGCACAGT TGGTCTCCAG CATATTGGAA
GACAGCGCCG AAGCCGTCTA TATCAGTAAC CACCAGCATG AGATCATCGC GGTCAACAAG
GCGATGTGCC GCATCTGCGG CTATAGCGCC GACCAACTGT TGAATAAGAG CCCGCTGGAT
CTACAGGGAT TTTGCGAGGC CAGCCAAAGA CAAATCGATT TTCTACAGAG CCTGGAAGAT
CGCGGCAGCT GGCAGGGCGA GACCCTGAAG ACCCGCTCCG ATGGCAGCCA ATTTCCTGCC
TGGAAGAGCT GCCGCAAGCT GCAGATAGAC GGCGAGATCT TCTATGTCAC CCTGTTTAGC
GACATCAGCG CCAAGAAGCG GCTGGAGTCG CGCCTGACCG AGCAGGCCAT GGTCGACACC
CTGACCGGCC TGCCCAATCG CCACCAGCTC AAGCTGCATC TGGATCAGGT GCTGGCCGAT
GCCACGGAAG TGGGCGGAAA GCCGGGCGCC GTGATGTTTA TGGACCTTAA CGGCTTCAAG
AATGTGAACG ATTGCTTCGG CCACGCCACA GGCGACAAGG TACTGCAATT GGTGGCGGCG
CGCCTCGAGG CCAGCTGCAT CGACAATGCC CATATCGCCC GTCTCGGCGG CGACGAATTT
ACCTTGGTGC TGAGCGATTG CCAGGACAGC GAGGAGATAG AGGCCGTCTC ACAGCAGCTG
CTGGCGATAT TCGACGCGCC CTTCGAGATC AACGGACAGA AGTTCTTCCT GGGGACCAGC
ATAGGCATAG CCTGCTTCCC CGAACATAGC GACCAGGCCG CTCAGCTGCT CAGCTTTGCC
GATACCGCCA TGTATTGCGC CAAGAAGAGC CCTAATCATG TGCTCTTCTA CGACAGCCAG
ATGCACAGGG ATGCCCAATA CAAGCTGAAG ACCATCAACG ACCTGCGCCA TGCCTTTAGC
CTGAACCAGT TCCAGCTGGC CTATCAGGTG ATCGTCAATC TCGATGGCAG CCAGGTATTG
GGAGTCGAGG CGCTGCTGCG CTGGCACAAG AGTGAGACAG AGATAATCGA AGCCAGCGAC
TTCGTCCCCC TGCTGGAAGA AACCGGCCTG TTGATCAACA TAGGTCAGTG GGTGCTCACC
ACTGCCTGTG AGCAGGTCGC CAAGTGGCGC AGCGAGATAG ATAAACCACT TCAGGCCTGC
GTGAATGTGT CGGCGACCCA ACTGGAACAT CCGGATTTTG TTAAGCAGGT GACCCATGCG
CTCGAATCCA GCGGCCTGCC CGCCAACGGC CTGGTACTGG AGATCACCGA ATCGGCCCTG
CTGCGCCAAC CCAAACGGGT GAAAGCCACT CTCAATCACC TCAAGGCTCT AGGGGTGCGT
ATCGCCATCG ACGACTTCGG CGCCGGGCTC TCTTCCCTCA GCAAGTTGGG CAGCCTCCCT
ATAGACACGC TCAAGATAGA TGCGGGCTTC GCCGAGCGAC TCAACGATCC CCAAGGGCGC
GAGCTCTGCC AGGCCATGAT ACAGCTGGCT CAGGCGCTAA AGATCCAATT TGTGGTGGAA
GGGGTCGAGA CGCTGGAGCA GAAGCAGATA CTGGCTGGGA TGGGCCAAGG ATTCGCCCAG
GGGTATTTTT ATGGTTATCC TACGGCGGCG GAGCAGTTCA CCAAGGCAAA CTTCATCCTG
CATTGA
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| Protein sequence | MGPWFTLLAQ LRSAQPEIQR QLDSWRQDEC AYLAVLKGHA FIGASQGTLD YFDTQRDSFI
TATPYDFSPR IQASGINSIE VAQQLIERVH QGEVVSINWL HMSQLGRELP TKVTMLPADH
EGSQVILARF DPADRRAKRR ETVSNGFDRL PAQLVSSILE DSAEAVYISN HQHEIIAVNK
AMCRICGYSA DQLLNKSPLD LQGFCEASQR QIDFLQSLED RGSWQGETLK TRSDGSQFPA
WKSCRKLQID GEIFYVTLFS DISAKKRLES RLTEQAMVDT LTGLPNRHQL KLHLDQVLAD
ATEVGGKPGA VMFMDLNGFK NVNDCFGHAT GDKVLQLVAA RLEASCIDNA HIARLGGDEF
TLVLSDCQDS EEIEAVSQQL LAIFDAPFEI NGQKFFLGTS IGIACFPEHS DQAAQLLSFA
DTAMYCAKKS PNHVLFYDSQ MHRDAQYKLK TINDLRHAFS LNQFQLAYQV IVNLDGSQVL
GVEALLRWHK SETEIIEASD FVPLLEETGL LINIGQWVLT TACEQVAKWR SEIDKPLQAC
VNVSATQLEH PDFVKQVTHA LESSGLPANG LVLEITESAL LRQPKRVKAT LNHLKALGVR
IAIDDFGAGL SSLSKLGSLP IDTLKIDAGF AERLNDPQGR ELCQAMIQLA QALKIQFVVE
GVETLEQKQI LAGMGQGFAQ GYFYGYPTAA EQFTKANFIL H
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