| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3577 |
|---|
| Symbol | |
|---|
| ID | 4922650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 4274919 |
|---|
| End bp | 4275383 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640165199 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001095702 |
|---|
| Protein GI | 127514505 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCATA TCGCCCTCTA TGAGCCAGAG ATTGCCCCCA ATACCGGCAA TATCATCCGC
CTGTGCGCCA ACAATGGCTG CCAGTTGCAC CTTATCGAGC CATTGGGTTT CGATCTTGAA
GAGAAGAAGC TGCGCCGCGC CGGGCTGGAC TATAGCGATC TGACCCGGGT CACCCGCCAC
AAGGACTTCG AGAGTTTCTT GAGCGCCATG GCTGGCAAGC GCATCATGGC CTGTACCACC
AAGGGCAGTC GCCCCCACAG CGAAATCGCT TTCGAGAAGG ATGATGTCTT ACTCTTTGGC
CCTGAGACCC GCGGCCTGCC GATGCCGATT ATCGAGTCTA TCCCCACCAG CCAGCGCCTG
CGCATCCCCA TGGCCGCCAG CAGCCGCAGC CTCAACCTGT CCAACTCGGT CGCCATCATC
AGCTATGAGG CCTGGCGTCA GCTCGGCTAC GAGGGCGCCT GCTAA
|
|---|
| Protein sequence | MFHIALYEPE IAPNTGNIIR LCANNGCQLH LIEPLGFDLE EKKLRRAGLD YSDLTRVTRH
KDFESFLSAM AGKRIMACTT KGSRPHSEIA FEKDDVLLFG PETRGLPMPI IESIPTSQRL
RIPMAASSRS LNLSNSVAII SYEAWRQLGY EGAC
|
|---|
| |