Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3553 |
Symbol | |
ID | 4922688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4242295 |
End bp | 4244118 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640165175 |
Product | GTP-binding protein TypA |
Protein accession | YP_001095678 |
Protein GI | 127514481 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.718809 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTAGAGA ATTTACGTAA CATCGCCATT ATTGCACACG TTGACCATGG TAAAACGACC CTGGTTGATA AGCTGCTGGC ACAGTCTGGA ACCCTTGAGA CTCGAGGAGA GGCCGCTGAG CGGGTGATGG ATTCCAACGA TCTTGAAAAG GAACGTGGAA TCACGATTCT GGCGAAGAAT ACTGCCATCA AGTGGAACGA TTACCGTATC AACATCGTTG ATACCCCTGG CCACGCCGAT TTCGGTGGCG AGGTAGAACG TGTACTTTCT ATGGTTGACT GTGTGCTACT GCTAGTTGAT GCGGTCGATG GTCCAATGCC ACAGACACGT TTCGTGACTA AGAAAGCCTT CGCTCAAGGC CTTAAGCCTA TCGTAGTGAT CAACAAGATC GACCGTCCGG GTGCGCGCCC TGATTGGGTT ATCGATCAAG TATTCGACCT GTTCGACAAC CTGGGTGCTA CCGACGAGCA GCTGGACTTC CCAATCGTTT ATGCGTCTGC ACTGAACGGT TTCGCGACTC TGGATCCTGA AGAGACTGGC GCAGACATGA CGCCACTGTT CGAGACCATC GTCGAGAAAG TATCTTCACC TGACGCCGAT GCCGAAGGTG CCTTCCAGAT GCAGATCTCT CAGCTGGACT ACAACTCATA CGTGGGCGTT ATCGGCGTTG GCCGTATCAA GCGCGGCAGC GTTAAGGTAA ACCAGCAGGT TACCGTAGTG GGCGCTGACG GCACCACACG TAACGGTAAG ATCGGCCAGG TACTTGGTTA CATGGGTCTG GACCGTCACG AAGTGGCTGA AGCTAATGCC GGCGACATCG TAGCGATCAC AGGTCTTGGC GAGCTGAAGA TCTCTGACAC TGTATGTGCC GTGGGCAACG CCGAAGCCTT GCCACCTCTG TCTGTTGACG AGCCAACATT GACCATGACC TTCCAGGTAA ACACCTCGCC ATTCGCTGGT AAAGAAGGTA AGTACGTGAC TTCACGTAAC ATCCTTGAGC GTCTGCAACA GGAACTGGTA CACAACGTGG CACTGCGCGT CGAAGAGACA GACAGCCCAG ACCGTTTCCG CGTATCGGGC CGTGGTGAAC TTCACCTGTC TATCCTTATC GAAAACATGC GTCGTGAAGG CTACGAGCTG GCCGTATCGC GTCCTGAAGT TATCGTTAAA GAGATCGACG GCGAGAAGTG CGAGCCATAC GAGACGCTGA CCGTTGACGT TGAAGAAGAG CACCAAGGTG CGGTGATCGA GAAGCTAGGT ACCCGTAAGG CGGACATGCG CGACATGCAG CCAGACGGTA AAGGCCGTGT GCGTATCGAC TTCATCATTC CTAGCCGTGG CCTGATCGGT TTCCAAACCG AGTTTATGAC AGCCACTTCT GGTACAGGTC TTATCTACCA CTCATTCGAC CATTATGGTC CAGTGAAGGG TGGCGATATC GGTCAACGTC AGAACGGTGT GTTGATCTCT AACGCTACCG GTAAGGCACT GACCTTCGCC CTGTTCGGTC TGCAAGACCG TGGTCGTCTG ATGATCGGTC ACGCGGCAGA AGTTTATGAA GGCCAGGTAG TGGGTATCCA CTCTCGTGCC AACGACCTGA CAGTTAACTG TCTGAAGGGT AAGCAGCTGA CCAACATGCG TGCCTCTGGT ACCGACGAAG CTCAGGTACT GACACCGCAC ATCCAGATGA CCCTAGAGCA GGCGCTCGAG TTTATCGATG ACGACGAATT GGTAGAAGTG ACTCCGCAGA GCATCCGCGT GCGTAAGCGT CACCTGACCG AAAACGATCG TAAGCGTGCC AGCCGCGCCT CGAAAGACGC TTAA
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Protein sequence | MLENLRNIAI IAHVDHGKTT LVDKLLAQSG TLETRGEAAE RVMDSNDLEK ERGITILAKN TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDCVLLLVD AVDGPMPQTR FVTKKAFAQG LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPEETG ADMTPLFETI VEKVSSPDAD AEGAFQMQIS QLDYNSYVGV IGVGRIKRGS VKVNQQVTVV GADGTTRNGK IGQVLGYMGL DRHEVAEANA GDIVAITGLG ELKISDTVCA VGNAEALPPL SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFRVSG RGELHLSILI ENMRREGYEL AVSRPEVIVK EIDGEKCEPY ETLTVDVEEE HQGAVIEKLG TRKADMRDMQ PDGKGRVRID FIIPSRGLIG FQTEFMTATS GTGLIYHSFD HYGPVKGGDI GQRQNGVLIS NATGKALTFA LFGLQDRGRL MIGHAAEVYE GQVVGIHSRA NDLTVNCLKG KQLTNMRASG TDEAQVLTPH IQMTLEQALE FIDDDELVEV TPQSIRVRKR HLTENDRKRA SRASKDA
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