Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3499 |
Symbol | |
ID | 4923051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 4184648 |
End bp | 4186753 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640165121 |
Product | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase |
Protein accession | YP_001095624 |
Protein GI | 127514427 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTATCTGT TTGAAGGTCT CAAGGAGTCT GCGTCAAGTT ACTTAGAAGC GACGCAGGTA GAATTACTCA AGCAGGCCTA TCAGGTAGCG CGCGATGCTC ATGAAGGGCA GATGCGCACG AGTGGCGAAC CCTACATTAC CCATCCGGTT GCGGTTGCCC GCATCTTGGC CGATATGCGT CTCGATCATG AGACACTCAT GGCCGCCCTG CTGCACGACA CCATTGAAGA TACCCCTGTC ACCAAAGAAG AGCTCTCGGA GCTGTTTGGT GAGTCTGTGG GCGAGCTGGT CGAAGGCGTC TCCAAGCTGG ACAAGCTAAA GTTCAGAGAC AAGAAAGAAG CTCAGGCGGA AAACTTCCGC AAGATGATGA TGGCCATGAC CCAGGATATC CGGGTGATCC TCATCAAGCT GGCCGACCGC ACCCACAACA TGCGCACCCT TGGCGCCCTG CGTCCCGACA AGCGTCGCCG CATCGCCCGC GAAACCCTGG AAATTTACGC CCCCATCGCC AACCGTCTGG GTATTCACAA TATCAAGACT GAACTGGAAG ATCTGGGCTT TCAGGCCTAT TACCCCATGC GCTACCGGGT ACTCAAAGAG GTGGTCAAGT CTGCACGTGG CAACCGAAAA GAGCTGATCC AGAATATCGA AGGCGCTATC AAGACCCGCC TCGAAGACAC AGGTCTCAAG GGCACGGTCA AGGGCCGAGA GAAAAACCTC TATTCCATCT ACAACAAGAT GTGTAACAAG GAACTCCAGT TCCAAGAGGT GATGGATATC TATGCGTTTC GGGTGATCGT CGACTCCATT GACACCTGTT ATCGCGTCAT GGGCGCCATG CACGGCCTGT ATAAGCCGCG TCCCGGTCGC TTCAAAGATT ATATTGCCAT CCCCAAGGCT AACGGTTATC AGTCGCTGCA TACCTCGCTA TTTGGTCCAC ACGGCGTACC GGTGGAGATC CAGATTCGTA CCGAAGATAT GGATCAGATG GCCGACAAGG GGGTTGCGGC CCACTGGCTC TACAAGGGCG CCGGTTCGGC CCAGCAAGGC ACCACCACTC AGGTGCGTGC CCGCAAGTGG ATGCAGAGCC TGCTGGAGCT GCAACAGAGC GCCAGCACCT CCTTCGAATT CGTCGAAAAC TTCAAGACAG AGCTGTTCCC GGAAGAGATC TATGTCTTCA CCCCAGAGGG ACGCATTCTC GAGCTACCTG TGGGCGCCAC TGCGGTGGAC TTTGCCTACG AGGTGCATAC CGACGTGGGC AACACCTGTG TCGGCGCGCG GGTCAACCGT CAGGCCTATC CGCTGAGTCA GCCGCTGATT TCCGGTCAGA CTATCGAGAT CATCACCGCC AAGGGCGCGC GCCCCAACGC CGCCTGGCTC AACTTCGTGG TGACGGGTAA GGCACGCGCT AAGATCAGAC AGCTGCTCAA GAGCCTCAAA GAAGACGATG CCGTACTGCT CGGCAAGCGT CTGCTCAACC ACGCCCTGGG CGACATCAAG CTCAAGGATA TCCCTCAGGA GCAGATCGAT AAGGTGGTGA GCGAGACCAA ACACGCCACC CTAGATTCCC TGCTGGCCGA CATCGGCCTG GGCAACGCCA TGAGCATAGT GATTGCCCAG CGTCTCAAGG GCGATCGGGT CGAGCAGCAC GAACATAAAG AATCCAACAT GATGCCGATC CGCGGCGCCG AAGGCATGCT GGTCTCCTTC GCCAACTGTT GTCGCCCTAT CCCAGGTGAT GCGGTGATCG CCCATGTGAG TCCGGGTAAA GGCCTGGTGG TGCACATGGA AAGCTGCGCC AACATCCGCG GTTATCAGGG CGAGCCAGAC AAGTATATTC CTGTGCACTG GGATAACGCC GAGGGCGTCG AGTTCCAGGC CAACCTGCGC ATCGAGATCG TCAACCACCA GGGCGCGCTG GCCAAGATCA CCTCTATCGT GGCCGCCGAG GGCTCGAATA TCCATAACCT GAGCACCGAA GAGCGCGACG GCCGGGTATT CTTGATTAAC TTACGGATCT CGGTCACCGA CCGGGTCCAC TTAGCCAACG TGATGCGCCG TATCAGGGTA CTGCCGGAAG TGCTGCGCAC ATCGCGTAAT CGTTAG
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Protein sequence | MYLFEGLKES ASSYLEATQV ELLKQAYQVA RDAHEGQMRT SGEPYITHPV AVARILADMR LDHETLMAAL LHDTIEDTPV TKEELSELFG ESVGELVEGV SKLDKLKFRD KKEAQAENFR KMMMAMTQDI RVILIKLADR THNMRTLGAL RPDKRRRIAR ETLEIYAPIA NRLGIHNIKT ELEDLGFQAY YPMRYRVLKE VVKSARGNRK ELIQNIEGAI KTRLEDTGLK GTVKGREKNL YSIYNKMCNK ELQFQEVMDI YAFRVIVDSI DTCYRVMGAM HGLYKPRPGR FKDYIAIPKA NGYQSLHTSL FGPHGVPVEI QIRTEDMDQM ADKGVAAHWL YKGAGSAQQG TTTQVRARKW MQSLLELQQS ASTSFEFVEN FKTELFPEEI YVFTPEGRIL ELPVGATAVD FAYEVHTDVG NTCVGARVNR QAYPLSQPLI SGQTIEIITA KGARPNAAWL NFVVTGKARA KIRQLLKSLK EDDAVLLGKR LLNHALGDIK LKDIPQEQID KVVSETKHAT LDSLLADIGL GNAMSIVIAQ RLKGDRVEQH EHKESNMMPI RGAEGMLVSF ANCCRPIPGD AVIAHVSPGK GLVVHMESCA NIRGYQGEPD KYIPVHWDNA EGVEFQANLR IEIVNHQGAL AKITSIVAAE GSNIHNLSTE ERDGRVFLIN LRISVTDRVH LANVMRRIRV LPEVLRTSRN R
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