Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3424 |
Symbol | |
ID | 4923504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4079474 |
End bp | 4082071 |
Gene Length | 2598 bp |
Protein Length | 865 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640165036 |
Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
Protein accession | YP_001095549 |
Protein GI | 127514352 |
COG category | [C] Energy production and conversion |
COG ID | [COG1049] Aconitase B |
TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000873552 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTAGAAG CATATCGTAA ACACGTCGCA GAACGTGCTG CAGAGGGCGT AGTCCCTAAG CCACTAGATG CCCATCAAGT GGCCGAATTA ATCGAATTAG TTAAGAATCC ACCTGCGGGT GAAGAGGAGT TCATCCTCGA CCTGCTGGAA AACAGAATTC CACCAGGTGT TGACGAAGCG GCCTATGTGA AAGCCGGTTT CCTCGACGCG GTTGCCAAAG GTGAGGCAAC ATCTCCTATC CTGTCTGCGG CGCGCGCCGT TGAGCTACTG GGTACCATGC AGGGCGGTTA CAACATCGAG CCGCTGATCG CGCAACTCGA CAATGACGTT CAGGCACCAT TGGCGGTTAA GGCACTGTCA AACACCCTGC TGATGTTCGA TGCCTACCAC GATGTGGTTG AGAAGATGCA AGCGGGCAAC GCTCACGCTA AGCAAGTGGT TGAGTCTTGG GCGAACGCCG AGTGGTTCCT CAGCCGTCCT AAGCTGGCCG ACAAGGTTAC CCTGACCGTA TTCAAGGTGA CAGGTGAAAC CAACACAGAC GATCTGTCAC CAGCTCCTGA TGCCTGGTCT CGTCCAGATA TCCCACTGCA CGCCCTGGCG ATGCTGAAAA ACGCGCGCGA CGGCATAGTA CCTGACGAAG CGGGCGTGAA AGGCCCAATT AATGAGATCG AAGCCCTGAA ACAGAAGGGT CATCCACTGG TTTATGTAGG CGACGTTGTG GGTACAGGTT CTTCACGTAA GTCTGCGACC AACTCTGTAC TTTGGTTCAT GGGCGACGAT ATCCCATTCG TACCTAACAA GCGTGCCGGT GGTTTCTGTC TAGGTGGCAA GATCGCGCCT ATCTTCTTCA ACACCATGGA AGATGCCGGT GCACTGCCAA TCGAGCTAGA CGTAAGCAAG ATGAACATGG GCGATGTGAT CGACATCTAC CCATACGAAG GCGTGGTTAA GCTACACGGC AGCGACGAAG TGATCTCTGA GTTCAAGCTC AAGACTGACG TGCTGCTTGA CGAAGTACGT GCCGGTGGCC GTATTCCGCT GATCATCGGT CGTGGTCTGA CTGATCGCGC TCGTGAGACC CTAGGTCTAC CAGCCTCTGA CGTGTTCGTA CGTCCACAAG ATGTGGCCGA TTCTGGTAAG GGTTACACCT TGGCACAGAA GATGGTGGGT AAGGCATGCG GCGTAGCCGG TGTGCGTCCT GGCCAATACT GCGAGCCTAA GATGACTTCT GTGGGTTCAC AAGACACCAC AGGTCCTATG ACACGTGACG AGTTGAAAGA CTTGGCATGT CTTGGCTTCA GCGCCGACCT GACCATGCAG TCATTCTGTC ACACTGCCGC TTATCCTAAG CCAGTTGACG TGAACACTCA TCATACGCTA CCTGACTTCA TCATGAACCG TGGCGGTGTA TCGCTGCGTC CTGGTGACGG TGTTATCCAC TCTTGGTTAA ACCGTATGCT GCTGCCTGAT ACCGTAGGTA CGGGTGGTGA CTCGCATACT CGTTTCCCAA TCGGTATCTC TTTCCCAGCG GGTTCTGGTC TGGTGGCTTT CGCCGCTGCG ACCGGTGTGA TGCCACTGGA TATGCCTGAG TCTATCTTGG TTCGCTTCAA GGGCGAAATG CAGCCTGGTA TCACACTACG TGACCTGGTA CATGCGATTC CGCATAAGGC GATCGAAATG GGTCTGCTGA CTGTTGAGAA GAAAGGCAAG ATCAACGCCT TCTCTGGTCG TATCCTGGAG ATCGAAGGTC TGGAGAAGCT GAAGGTTGAG CAGGCATTCG AACTGTCTGA TGCCTCTGCC GAGCGCAGTG CTGCCGGTTG TACTATCAAG CTGGACAAAG AGCCTATCAT CGAATACCTC AACTCTAACA TAGTGATGTT GAAGTGGATG ATCGCCGAAG GTTACGGTGA CCGTCGCACT ATCGAGCGTC GTATCGCCGC GATGGAAGAG TGGTTGGCTA ACCCAGAGCT GATGGCTGCC GATGCTGATG CAGAATACGC CGAAGTGATC GAGATCGATC TGAACGAGAT CAAAGAGCCT ATCCTGTGTG CACCAAACGA TCCAGATGAT GCCGTGCTCC TGTCTCAGGT GAAAGACACC CAGATCGACG AGGTGTTCGT TGGTTCTTGT ATGACCAACA TCGGCCACTT CCGTGCAACC GGTAAGATGC TAGACAAGTT CGCCAAGACG CTACCAACCC GTTTGTGGAT CGCGCCACCA ACTAAGATGG ACCGCGATCA ACTGACAGAA GAGGGTTACT ACGCCATCTT CGGTCGTGTC GGTGCGCGCA TCGAGATCCC TGGTTGTTCT CTGTGTATGG GTAACCAGGC ACGTGTTGCC GAGGGCGCGA CGGTAGTATC TACCTCTACC CGTAACTTCC CGAACCGTCT GGGTACCGGC GCAAACGTCT ACCTGGCGTC TGCCGAGCTG GCCGCGGTTG CCGCGCTGTT GGGTCGTCTG CCAAGCGTTG AAGAGTATCA AGAGTACGCC AAAGAGATCG ATGCCACTGC AGCCGATACT TACCGTTACC TGAACTTCGA CCAGATCGAT TCATACACAC AAAAAGCGGG CGAAGTGATC TTCCAGTCTG CCGTGTAA
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Protein sequence | MLEAYRKHVA ERAAEGVVPK PLDAHQVAEL IELVKNPPAG EEEFILDLLE NRIPPGVDEA AYVKAGFLDA VAKGEATSPI LSAARAVELL GTMQGGYNIE PLIAQLDNDV QAPLAVKALS NTLLMFDAYH DVVEKMQAGN AHAKQVVESW ANAEWFLSRP KLADKVTLTV FKVTGETNTD DLSPAPDAWS RPDIPLHALA MLKNARDGIV PDEAGVKGPI NEIEALKQKG HPLVYVGDVV GTGSSRKSAT NSVLWFMGDD IPFVPNKRAG GFCLGGKIAP IFFNTMEDAG ALPIELDVSK MNMGDVIDIY PYEGVVKLHG SDEVISEFKL KTDVLLDEVR AGGRIPLIIG RGLTDRARET LGLPASDVFV RPQDVADSGK GYTLAQKMVG KACGVAGVRP GQYCEPKMTS VGSQDTTGPM TRDELKDLAC LGFSADLTMQ SFCHTAAYPK PVDVNTHHTL PDFIMNRGGV SLRPGDGVIH SWLNRMLLPD TVGTGGDSHT RFPIGISFPA GSGLVAFAAA TGVMPLDMPE SILVRFKGEM QPGITLRDLV HAIPHKAIEM GLLTVEKKGK INAFSGRILE IEGLEKLKVE QAFELSDASA ERSAAGCTIK LDKEPIIEYL NSNIVMLKWM IAEGYGDRRT IERRIAAMEE WLANPELMAA DADAEYAEVI EIDLNEIKEP ILCAPNDPDD AVLLSQVKDT QIDEVFVGSC MTNIGHFRAT GKMLDKFAKT LPTRLWIAPP TKMDRDQLTE EGYYAIFGRV GARIEIPGCS LCMGNQARVA EGATVVSTST RNFPNRLGTG ANVYLASAEL AAVAALLGRL PSVEEYQEYA KEIDATAADT YRYLNFDQID SYTQKAGEVI FQSAV
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