Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3405 |
Symbol | |
ID | 4923708 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 4054776 |
End bp | 4056392 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640165017 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001095530 |
Protein GI | 127514333 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGCG TGAGCGCCAC CCAGGAAATT CCTGCCGAGA TAGCAGAGCA AGTCGTTCCT CCCCAGGCGA CTAAGCCCCA GGGCTATGAG CGCGGCAGCT TTCGCTCCTG GGTCGCCGTG TTTGCCGGCC TGCTGGGCGC CTTCATGGCG ATCCTGGATA TTCAGATCAC CAACGCCTCG ATGAAGGAGA TCCAGGGCAG TCTGGGCGCG ACGTTGGAGG AGGGGTCCTG GATAGCCACC GCCTACCTGG TGGCCGAGAT GATTGCCATC CCGCTATCGG GCTGGCTGAG TCAGGGGTTG TCGGTTAGGC GATATCTGCT GTGGACCACG GCGGCCTTCA TCTTGGCTTC GTTTCTCTGT TCGCTGGCCT GGAATCTGGA GGCGATGATC GCCTTTCGCG CCCTGCAGGG CTTCTTCGGC GGCGCGCTGA TCCCGCTGGC CTTTCGGCTG ATCTTGGAGC TGCTCCCCAA GGAGAAACGT GCCACAGGCA TGGCGCTGTT TGGTGTCACC GCCACCTTCG CGCCATCTAT CGGCCCCACC CTGGGCGGCT GGCTCACCGA GCAGTTTAGC TGGCACTATC TCTTCTATAT TAATATTCCC CCCGGGCTGC TGGTGATGGC CATGTTGGCC TATGGTTTGA GAGCTCAGGC TATCGATTGG GATAAGCTGA AGAACGCCGA TTACTCTGGC ATAGTCACCA TGGCGCTGGG CATGGGGTGC CTCGAGGTGG TGCTGGAGGA GGGCAATCGT AAGGATTGGT TTGGTTCAGA GCTGATCCAG AATCTAGCGA TCGTTGCCGC CATCAACATA GCCCTGTTTG TCTTTATTCA GCTGCGAAAG TCATCGCCGC TGGTGAACCT CAGGCTACTG GGGCAGCGTG ATTTCGCCCT GTCGACCTTG GCCTATTTTC TGCTGGGAAT GGCGCTGTTT TCGGCTATCT ATATGATCCC CCTCTATCTG TCGCAGATCC ATGACTATAG TCCGCTGGAG ATCGGTGAGG TGATCATGTG GATGGGCTTT CCTCAGCTGC TGGTACTGCC TCTGGTGCCG AGATTGCTGC AGAGATTCGA CGGGCGGTAC CTGGCCGCCT TCGGTTTTAG CATGTTTGCC CTGAGTTACT ACATGAACAG CCACATGACG CTGGACTTTG CCGGTGAGCA GATGATCGCG GCCCAGGTGG TCAGGGCCCT TGGTCAGCCC TTTATCCTGG TGCCTATCGG TATTATTGCG ACCATGCATA TCAGCGCCCA GCAGACGCCG TCGGCCTCGA CCGTGCTCAA TGTGATCCGT AATCTCGGCG GCGCCTTCGG TATCGCCCTG GTGGCCACCC TGATCGACAA TCAGTCGCGT ACCCATCTGG CGGACATGAA ACAGACGGTG GCGGCGGTGA GTGGCCAGGC CTATCAATAT CTGCAGCAGA CCAGTCAGCT GTTTGTGCAG GCAGGCTCGG ATCCCGTAAC CGCCCAGGCG CAGGCCAAGG CCATGTTGGC CAAGACCATG ACCCAGCAGG CCTACATTCA GGCCTACAAC GATGTGTTTC TGATCATCTC TGTGCTGCTG ATGCTGGCCG TGGTGGCCGT ACTGATGATC CGCAAGCCTA AGCCCGACGC CGCCTAG
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Protein sequence | MSSVSATQEI PAEIAEQVVP PQATKPQGYE RGSFRSWVAV FAGLLGAFMA ILDIQITNAS MKEIQGSLGA TLEEGSWIAT AYLVAEMIAI PLSGWLSQGL SVRRYLLWTT AAFILASFLC SLAWNLEAMI AFRALQGFFG GALIPLAFRL ILELLPKEKR ATGMALFGVT ATFAPSIGPT LGGWLTEQFS WHYLFYINIP PGLLVMAMLA YGLRAQAIDW DKLKNADYSG IVTMALGMGC LEVVLEEGNR KDWFGSELIQ NLAIVAAINI ALFVFIQLRK SSPLVNLRLL GQRDFALSTL AYFLLGMALF SAIYMIPLYL SQIHDYSPLE IGEVIMWMGF PQLLVLPLVP RLLQRFDGRY LAAFGFSMFA LSYYMNSHMT LDFAGEQMIA AQVVRALGQP FILVPIGIIA TMHISAQQTP SASTVLNVIR NLGGAFGIAL VATLIDNQSR THLADMKQTV AAVSGQAYQY LQQTSQLFVQ AGSDPVTAQA QAKAMLAKTM TQQAYIQAYN DVFLIISVLL MLAVVAVLMI RKPKPDAA
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