Gene Shew_3363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3363 
Symbol 
ID4924206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp4010975 
End bp4011427 
Gene Length453 bp 
Protein Length150 aa 
Translation table11 
GC content60% 
IMG OID640164975 
Product3-dehydroquinate dehydratase, type II 
Protein accessionYP_001095488 
Protein GI127514291 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0757] 3-dehydroquinate dehydratase II 
TIGRFAM ID[TIGR01088] 3-dehydroquinate dehydratase, type II 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.259013 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAAG CGGTGAAAAT TCTCCTGGTA AACGGCCCCA ACCTCAACCT GCTGGGTCGA 
CGCGAGCCCG GCCACTATGG TCATCACACC CTGGCGCAGA TCGTCGAGCA GCTTAAGCTG
CTGGCTGGTG AGCAAGGCGC CAGCCTGGAT CATATTCAGT CCAACGCCGA ACATGAGCTG
ATCGACGCCA TTCACCAGAG CGACGCCGAC TTCATCATCA TCAATCCAGC GGCCTTTACC
CACACCAGTG TGGCCCTGAG AGACGCCCTG CTCGGCGTCG CCATCCCCTT CATCGAGGTG
CACCTCTCAA ACGTTCATGC CAGAGAGGCC TTCAGGCATC ACTCCTACTT CTCCGACAAG
GCGGTCGGCG TCATCTGCGG CCTGGGAGAA CAAGGCTATC GCTACGCCCT GGACTCGGCC
ATCGCCCGCG TCAGAGCCGC TCAGGAGAAG TAG
 
Protein sequence
MSKAVKILLV NGPNLNLLGR REPGHYGHHT LAQIVEQLKL LAGEQGASLD HIQSNAEHEL 
IDAIHQSDAD FIIINPAAFT HTSVALRDAL LGVAIPFIEV HLSNVHAREA FRHHSYFSDK
AVGVICGLGE QGYRYALDSA IARVRAAQEK