Gene Shew_3294 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3294 
SymbolrplM 
ID4920795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3937139 
End bp3937570 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content44% 
IMG OID640164906 
Product50S ribosomal protein L13 
Protein accessionYP_001095419 
Protein GI127514222 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0102] Ribosomal protein L13 
TIGRFAM ID[TIGR01066] ribosomal protein L13, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000182384 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00115677 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGACTA CATATACTGC TACACCAGAA ACAGTGACGC GCGAATGGTT CGTTGTTGAC 
GCTGAAGGTA AAACTTTAGG TCGTATCGCG ACTGAAATCG CTCGTCGTCT ACGTGGCAAG
CATAAGGCAG AATACACTCC TCACGTTGAT ACTGGCGATT ACATCATCGT TATCAATGCT
GAGAAAGTAA CTGTAACTGG TAACAAAGCA GCAGCTAAGA CTTACTACTC TCATTCTGGT
TTCCCAGGTG GTATCAAGCA GATTACTTTC GATAAGCTGC AAGATCATAA GCCAGAAATG
ATTATCGAGA AAGCAGTAAA AGGTATGTTG CCAAAAGGTC CTCTAGGACG TGCCATGTAC
CGTAAACTGA AAGTTTACGC TGGCGCAGAG CACAACCACG CTGCACAACA ACCACAAGTT
CTTGATATCT AA
 
Protein sequence
MKTTYTATPE TVTREWFVVD AEGKTLGRIA TEIARRLRGK HKAEYTPHVD TGDYIIVINA 
EKVTVTGNKA AAKTYYSHSG FPGGIKQITF DKLQDHKPEM IIEKAVKGML PKGPLGRAMY
RKLKVYAGAE HNHAAQQPQV LDI