| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3227 |
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| Symbol | |
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| ID | 4921551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3850736 |
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| End bp | 3853213 |
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| Gene Length | 2478 bp |
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| Protein Length | 825 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164837 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001095352 |
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| Protein GI | 127514155 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGTGA ATCACCCCAA TCGCTTCTTG AGTATCAAAT GGAAACTCCT CATCGCGGTG
ATTCTGATCT TGACCCTGGT GGGTGGGGTG ATCTGTACCT TGGCCTACCA GCAGCTACTG
AACCAGCAGA AGATGTTACT GGAGGCCCAG CGGGACAAGC TGGCCCAGAG CCTCTCCTTC
TCCATGAGCA CGGCGGTGGA ACATTCGCTG CAGGCGGCGA TGCAGCTTGG GTTTGTGGCC
AATGCCAAGG GCGATGATGG TGCCGAGGGT TATCAGCTGT TGCTGAGTGA GAACTGGCCC
GACGTACAGC TCTATTGGGA TCTCAAGGGC TTCGGCCTGT ATCAGCTAAA CGGTGAACGA
CTGGCCCACG CGGGCGAGCC ACACTCTCAG GACGATCTCC AGTGGCTGAT GCAGAGTGAG
GCCTCCTATG AACTCACCTC CAGGGTGGTG TGTGTCGAGG ACTGTGTGAT CCAGGTGCTG
GTGCCGACCT TGGTGAACAG CAAGCCCCAT CTGTTCTTCT TCGAGTCGGC GCTCACCGAG
GTGATCAGTC ATTTTCGCAC CGACAAGTCG ATCGAGCTGG CGGTGTTAGG CGCCCAGTCT
CGCGGCGCCG AGCCAGGCCC TCTGTGGGGG CGTCATCTTT ATAGTATCAG CAACCGCCCC
AGCAGCTTCG CCCTGCTGAG TCACATGGCC GGTAGCTACT CCTGGCAGCA GATCTCCCTC
GGAGAAGGCA TTTATAGCTA TCAGGGCAGC CACTGGGCGG TGTGGTCCTT CCCGCTGGAT
AAGGTGGAAA ATGCTCCGGC GATAGTGGTG TTGATGAGTC TGGAGCAGTG GCAGCAGATG
CTATCCACCT TTCAGCTGGG GATGGTTGGC ACCCTGCTGG TGGGGCTGAT CTTGGCCGCC
GGTCTGGTGC TGTTAGTGGC TTGGTCGCCA GTCGTCAGCC TGGCGCGCCA CGCCAGCCTC
TTGCCCCTGC TGGCGGACCA CGACTTTGGC AGCGTACGCA CCAGCCTGCC GAGAAAGCCA
TCCTGGTTTC CCGACGAGGT GGACCTGATC CATCTGGCGA CCCGACAGCT AGCCGACAAC
ATGCAGGGGA TGGAAAACGA GGTGGACGAG TACACCCATG AGCTTGAGCG GCTCGCCATG
CTGGATACCC TGACGGGCTT GCCCAACAAG GCCATGCTGC ACCACGAACT GCAGACCGCC
ATCGCCTGTA TCGCCAGCGA GGAAGATTGT GTGGTGCTCA TGTTCCTGGA TCTCGACGAG
TTTAAGCGGA TCAACGACAC CCTTGGGCAC ATTCAGGGGG ACGAACTGCT CAAGATAGTG
GCCGCCAGGC TGACCAATAG CGTGCGCGAG ATGGATACTG TGTTCCGTCA GGGGGGCGAT
GAGTTTCTTA TCTTGCTCAG GCAGGTGCGC GACGAGCAGG AGGTGAGCAA TGTGATCCAC
AGGATCTTCT CGGCCCTGCA GCATCCCGTT GTGCTGGGCA GTCACAAGCT GATCGTCACC
ACCAGTATTG GCCTGGCTTA CTGCAACACC TCGCAGCTCA GGGCGGAGGA GCTTATTCAG
CATGCGGATC TGGCCATGTA TCAGGCCAAG AGTGCCGGTC GCAGCAACTA CCGGGTGTTC
AGCGAAGAGA TGCTACATCA GGCCAATAAC CGCCTCATGA TAGAGCAGAG CATAGGGGCG
GCCATCAACG AGGAGCAGCT GGTGCTCTTC CTGCAGCCCA TAGTCGAGCT GCCCTCGGGC
AGGCTACGCG GCTTCGAGGC GCTGATCCGC TGGTTCCATC CCGAGCGCGG CCTCATCATG
CCGGGGGATT TCATTCCCGA TATCGAGCAT AGCGAGGCGA TCATCGAGGT GGGTAACTAT
GTGATCCGTA AGGCCTCGGA GTTAGTCGCC CAGCTCAAGT CGGCCGGCTG GCCCGAGCTT
TATATCGCGG TCAACCTGTC GGCCAAACAC TTCCTGGCCC CTGATCTGCT TAACGTGGTG
CGCCAGGAGG TGGAGGCGCA GCAGATCTCG GCTCAGTCCC TGCTGCTTGA GGTGACCGAG
GAGAGCGTGA TCGAGCAGGT AGAGCAGGCC ATGGCGGCCA TGGCGGCGCT CAAGGCGCTG
GGGGTGAGGA TCGCCATCGA CGACTTCGGC ACCGGCTATT CCTCGCTGAG CTATCTCAAG
CAGTTGCCCT TCGATCTCTT GAAGATAGAT CGCTGTTTCA CCGCCAATGT GCTCGATGGT
GAGGCCGATG CCCATATCAT CACCACAGTG ATCGAGCTGG CCCATAACCT GGGGCGTCAG
GTGGTGGCAG AGGGGATAGA GACTCAGCAG CAGGCGGAGT GCCTCAGCTG TCAGCGCTGC
GAGCTAGGTC AGGGCTACTA CTTCTCGCGG CCACTGGATG TGGCGTCGGT GTTTAAGGTG
TTGCAGGAGA TAGAGGAGAC TCGCTTGTGG CCCATCAGCC AGGCTCCCCA ACCTAAGTTG
GCTAGGCAGG GGAGCTAG
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| Protein sequence | MIVNHPNRFL SIKWKLLIAV ILILTLVGGV ICTLAYQQLL NQQKMLLEAQ RDKLAQSLSF
SMSTAVEHSL QAAMQLGFVA NAKGDDGAEG YQLLLSENWP DVQLYWDLKG FGLYQLNGER
LAHAGEPHSQ DDLQWLMQSE ASYELTSRVV CVEDCVIQVL VPTLVNSKPH LFFFESALTE
VISHFRTDKS IELAVLGAQS RGAEPGPLWG RHLYSISNRP SSFALLSHMA GSYSWQQISL
GEGIYSYQGS HWAVWSFPLD KVENAPAIVV LMSLEQWQQM LSTFQLGMVG TLLVGLILAA
GLVLLVAWSP VVSLARHASL LPLLADHDFG SVRTSLPRKP SWFPDEVDLI HLATRQLADN
MQGMENEVDE YTHELERLAM LDTLTGLPNK AMLHHELQTA IACIASEEDC VVLMFLDLDE
FKRINDTLGH IQGDELLKIV AARLTNSVRE MDTVFRQGGD EFLILLRQVR DEQEVSNVIH
RIFSALQHPV VLGSHKLIVT TSIGLAYCNT SQLRAEELIQ HADLAMYQAK SAGRSNYRVF
SEEMLHQANN RLMIEQSIGA AINEEQLVLF LQPIVELPSG RLRGFEALIR WFHPERGLIM
PGDFIPDIEH SEAIIEVGNY VIRKASELVA QLKSAGWPEL YIAVNLSAKH FLAPDLLNVV
RQEVEAQQIS AQSLLLEVTE ESVIEQVEQA MAAMAALKAL GVRIAIDDFG TGYSSLSYLK
QLPFDLLKID RCFTANVLDG EADAHIITTV IELAHNLGRQ VVAEGIETQQ QAECLSCQRC
ELGQGYYFSR PLDVASVFKV LQEIEETRLW PISQAPQPKL ARQGS
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