Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3216 |
Symbol | |
ID | 4921574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3835437 |
End bp | 3836336 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164826 |
Product | hypothetical protein |
Protein accession | YP_001095341 |
Protein GI | 127514144 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAACTT GCCGACAGGA GGTAACCATG GACAAGGTGT TTATTATTTC CCAGAAAGCC GAGCAGCAGG CCGATGCCAT TGAGACGGGG ATCGCCTTGG CCAGGGTATT GGAGAAGGAG GCAGAGGTGT TTGCCTACAG CTACGAATCC TTTGCGGGTA AGGAGTACTA CAATCCCAGG CTGGGTGCGG CGGCCAAGGT GGCCCTGATG AATCAGCGCA GCGAGGAGAT CGCCGCCAAG CTTAAGGCGC TCAAGGCGGA AGACGTGGCC GTGCATAGCG TGTGGACCAA AGATCTGTTC GAACATGCCT GTCATCACTC CATTCGTCAT GGGTTCGACC TCATGGTTAA GGCGGTGCAT CACAAGACTC ACTATCTGCC GATGGACTGG CAGCTGATCC GCCATGTGCG CATCCCGTTG ATGATGCTGT GCGACAACCC CTTGCAGCGT GCCCGCAGCG TGTTGATGGC GGTGGATCTG GGCAGCGACA ACCCCATCAA ACAGAAACTC AACCAGTGCG TCATTCAACA GGGTCGCCAG CTGGCAGAGG CGATGGACTG CCAGCTACAT CTGGCCTACA TCATACGCGT GCCTAAGATC TTAAGAGATA TGGACCTTAT CGACACCCGC ACCCTAGTGA AGGACGCCTA TCACAGGTAT CAGCCTCAGC TGGACGAGAT TGACCTGCAT CAGGAGCATG TACATTTCCT GGCGGGCGAT CCCGATCTTT GCCTCTACGA GCTCTCCTGT CGCCTCAAGG CCGCCTATCT GGTGATGGGC GCTCGCCAAC GCAAGGGGCT GATGGGCATG GTCATAGGCA ATACCGCCGA GGCCATGTTG ACCCGCATCC GCAGCAATGT GTTGATTATT CCAGCTGACG ATCAGCTGTT GCCTGCCTAA
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Protein sequence | METCRQEVTM DKVFIISQKA EQQADAIETG IALARVLEKE AEVFAYSYES FAGKEYYNPR LGAAAKVALM NQRSEEIAAK LKALKAEDVA VHSVWTKDLF EHACHHSIRH GFDLMVKAVH HKTHYLPMDW QLIRHVRIPL MMLCDNPLQR ARSVLMAVDL GSDNPIKQKL NQCVIQQGRQ LAEAMDCQLH LAYIIRVPKI LRDMDLIDTR TLVKDAYHRY QPQLDEIDLH QEHVHFLAGD PDLCLYELSC RLKAAYLVMG ARQRKGLMGM VIGNTAEAML TRIRSNVLII PADDQLLPA
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