Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3200 |
Symbol | |
ID | 4921590 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3812011 |
End bp | 3817317 |
Gene Length | 5307 bp |
Protein Length | 1768 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164810 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001095325 |
Protein GI | 127514128 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACATGA GCAGACTTCG TACCTTTCGT AGCCGGATAA TCGTACAGAT TGCCTTACCC CTTATCGCCA TCATGGCCAT GGTATTGAGC CTGATCGCCT GGTTTAACTA CCGGGCCGAA GAGAGCTACC TCTATGGCGA TCTCGAGAAG CAGGCCGAGA TGGTGGCCAG CAGGGTGCAT CATTTTCTCT CCTTCGCCGA GGAGGATACC CGTACCTTTG CCGATCTCTT AGGCCAGATG AGTCGCGATC AGCTGGTCCA TCAAGATGGT GAGCTCAAGG CATTGCTGAC CCGGCGCCTG GAGCGCCAGA GCGATTTCTA TGCCAGCGCC ATCGCCTTTC GCCCCAGCCT GACACCTAAT CAACAGCCCT ATGCCCCCTA TGTCTACCGG GATCAGGACG GGGTGAAGTT CCTGGATATC GGCGCCGACA GCTATGACTA CACCGACGGC CAATGGGCCT GGTGGAGCGA GGCGATAGAC AAGCCCCAGG GCTACTGGTC GCTGCCCTAT TTCGACGAGG GCGCCGGTAA CATCTTGATG ATCACCTTCT CCCACCCCTT CGGCCCCTCG AGTCCCTATT GGGGCGTGGT GACTGTGGAT CTGGCCCTGG ACGCCCTGCC AGCTATGGCG GGGATCGATG CCGATCGCAT GCTGGTATTG GATGACAAGG GGCGGCTGAT CTACCACAAG GATGCGCAGC TGCTGATGTC TCAGGGCACA GATAAGTGGC TCGCCCCATC AAATGACAAC GGCGACTTCA TCACCCTACT CCAGTCGGCC AAATCCGGGA ACAGCCGCAT GTTGGCCGCC GATGGTCAGG CCTATCTCGC CAGCGTAGGC GTGGTGCCTA AGCTCAACTG GCGGGTGGTG ATCATGACCC AGGAGGACAA GCTCTCCCAT CAGCTCTACA TGGGGCTCTC CTCCCTAGTG CTGACCCTGC TGCTTATCTC TGCCGTGCTT TACCTGACGG GTTATCTCAC CGCCAGACGC CTGTCACTGC CCATCGAGCG CCTAGCCGCC GGCATAGTGG CCTTCGGCGC CGGTAAGACC AAACATATCG AAGGCACCCG GGGCGCGGTG ACCGAGGTGG AGACCCTAAC GGACAAGTTT AACGAGCTGG CCGAGGTGCT GGCCCAGCGC GAGCAAGCGC TGCTGGATTC ACGCGGTAAC CGTTTCGCCA AGCTGATCGA TGGCATGAGC GACAAGTCCT TCTACTGCTC GCTGGAGCCC GATGGTCAGA TAGCCCAGGT TTCTGCGGGT GTCGAGAAGG TGCTGGGGGT CAGCCCGGAT CTGCTCAAGC GTAAATATCA GCGGATGTTC TCCGACAACC CCATCAACGA GGCGAACTGG GAGTACATGG ACAGCGCCCT GCAGGGCAAT AGTGTGCCGC CCCATCAGGT GGAGATGATC GCCGCCAACG GCAGTGTGCG TCGCCTGGAT CTCTTCATGC AGCCGCTATT GTCGGACAAC GGCGAGCTGC TTTCCATCGA GATGCTGTTT AACGATGTGA CCGAACAGTT CTCGGCGGCG GCGTGGTCCA ACGCCGTGCT GGAATCGGCG CCCGAGGCTA TGTTGATCGT CGACGAGCAG GGCCAAGTCG TCTTCAGCAA CAGTCGCTGC CAGCAGCTGT TTGGCTATGA TGCCCAGCAG ATGCTGGCGC TGAATGTCGA CCAGCTGGTG CCCGATAGCG TCAAGCATCA TGAGGCCCTA AGAGCCAAGT TTATCGGCGA AGGGGTGGAT CGTCGCATGG GCCTGGGGCT GGGTAAGACG CTCAAGGCAA AGAAGGCCGA CGGCAGCCTG TTTCCGGTGG AGATTAGCCT GGGGCTGCTA CCCGCCGACA GCGACGGTTT GCGCCAGGTG GCGGCCTCGA TACGGGACAT GACAGAAGAG TTGGCTACCG CCAAGCGGAT CAAGGACAGC GAGAGTCGTT TCCGTGGCCT GGTGGGCAAT ATTCCCGGCG CCGTCTACCG TACCCGATTG GGCGAGCAGT GGGTGATGGA GTATGTCAGC GACAACATCG CCGAGATCAC CGGCTATCCC GCCGCCGACT TTATCGAGAA CAAGAAACGG GTCTTTGCCA GCCTGATCCT GGAGGCGGAC AGGGAAGCCA CCGACACGGC GATCAACAAG GGGATCGCCG AGCAGCAGAG CTTCGAAGTG CAATACCGTA TTCAGCACAG GGATGGCAGC CTACGCTGGG TGCACGAGAA GGGCAAGGCC AGCTATGACG ATGAGGGCAA CGCCCTCTGG TTCGATGGCA GCATACAGGA TGTCACCCAG AGCAAACTGG CCCAAGAGAA GATTGCCCAG TCCCAGCAGC AGCTGGAGAC GATCACTGAG TCGATTCCCA ACACCGTCTA TCAGCTGCGT TGGATAGCCA ACGATCAGCG CTACTTCACC TTCCTCTCCC GCGCCTGCAT CACCACCCTG GGCTTCCACC GGGATCAGCT GCTGGCGAAC TTCGACCTGG TGGCCGACTG CATCATAGAG TCGGAGCGGG CCCGCATCAT TCGCGCCCTC TCCGGCGAGA GCGCCTCTGG GCTCAAGTGG ATCGAAGAGT TTCGCTACCA ACACCCCACC GGCGAGCAGC GCTGGCTACA AGCGGGGGCC AGGGGCGACC GTCAGGACGA TGGCAGCATA GTCTGGAACG GTTACCTGAT GGATATCAGC GAGCGCAAGC AGATGGACAG GGAGCTGGCC AAGCGCGAGG CGCACTTCAG GGCCCTGTTC GATAACGCGG GTATCGGCAT AGTCAATGTC GACGATCGCG GCGTTATCTT AGATTGCAAC GAGCAGTTCA GCCAATACCT GCAGCTGCCG ATCGAGCGTC TCAAGGGCAG TCTCTTCTTC GATTATCAGG ATCCTGAGCA GGGGCTCGAG GCTAAGAACA GCTTTAAACA CCTGATGGGC GACGGCGCCG ACAGCGTCAA GTTGGAGATC CGCCTGCTCA ACCAAGCTGG CGAGGCCAGG TGGATGGACG TCAACATGAC AGGCCTGTCC GACAAGCAGG GGGAATATCG CTCCGCCGTG CTCTCCATGG CGGATATCAG CTCCCTCAAG CTGCTCTCCG AGGAGCTGAC CCAGGCCAAG GATGTGGCCG ACGCCGCCAG CAAGGCCAAG AGCGACTTCC TGGCGAACAT GTCCCACGAG ATCCGCACGC CGATGAACGC CATTATCGGC ATGTCGCAGC TGTGTCTACA GACCAGTTTG GATAAGAAGC AGCAGAACTA TGTGGAGAAG ATCGACCGCG CCTCCAAGTC GCTGCTGGGG ATCATCAACG ACATCCTGGA CTTCTCCAAG ATAGAGGCGG GCAAGCTGGA TATCGAGGCA GTGCCTTTCC AGCTCGACAC TATGCTGGAA GATCTCAGCG ACATGTTTTC GGTCAAGGCC GCCGACAAGC AGCTCGAGCT GCTGTTTGCC GTGGCGCCTA ACATTCCCCG CCACTTAGTG GGAGATCCGC TGCGACTCAG TCAGGTGTTG ATCAATTTGA TGAACAACGC CATCAAGTTT ACCGAGCAGG GCGAGGTGAT GCTGTCGATC AGCCAACTGG TGCGCGAGGA TGAGGAGATA CTGCTCAAGT TCAGCGTGCG CGATAACGGC ATAGGCCTCA CCGAGGAGCA GCGCGGCAAG CTGTTCCAGT CCTTTAGCCA GGCCGACAGC TCCACCACCC GCAAGTATGG CGGCACCGGC CTTGGGCTGG CGATCTGTAA GCAGCTGGTG GAACTCATGG GCGGCGAGAT CGGCGTCGAG AGTCAGTTCG GCAACGGCAG CACCTTCTTC TTCAGCGTGC GCTTCAAGGT CGCCGACAAT CAGCTGATCA AGGTGGCCCA GGAGCTGGAA GGAATGCGGA TTCTGGTGGC CGACGACAAC GCCACCGCCC GGGATATTCT GCGCAGCACT CTCGAAAGCA TGGGCTTTAC CGTGGATACG GTGCGCAGCG GTGCCGAGGC GCTGAGTCGC TGTCAGGAGA CCGACTATGG GGTGGCGCTG ATCGACTGGC GCATGCCTGA GATGGACGGC CTGGAGACGG CGCGGCGGTT GCTGAGCGAG CGCACTAACC CGCCCAAGAC GCTGATCGTC TCGGCCCATG CCGACGGTGA TTTTATCGAC AAGGCGGAGC AGGCGGAGAT CTCGGGTTAT ATCACTAAGC CGATCAGCGC CTCGCGCCTG CTGGACGGCA TCATGTCGGC CCTGGGCAAG CAAGGCGCTA TGCCGGTGCG GCGCAAGGGC AGTGAGGTAA GTCCTGCCCT GCTGGCGCAG CTCAAGGGCA AGCGCATCCT GTTGGTGGAA GACAACGAGA TGAACCAGGA AGTGGCCAGC GAGTTTCTCG AGCAGGTGGG GGTGATCCTC TCGATCGCCG AGAATGGTCA GGTGGCGCTG GAGAAGCTGG CCATGCAGAG CTTCGATCTG GTGCTGATGG ATTGTCAGAT GCCGGTAATG GATGGCTATC AGGCCACCGC CGAGCTGCGT AAGCGTCCCG AGTTGGCAGA CCTGCCGGTG ATCGCCATGA CGGCCAACGC CATGGCCGGG GATAAGGAGA TGTGCCTGCG CGCCGGTATG AACGACCATA TCGCCAAGCC TATCGAGGTG TCGCTGCTCT ATAAGACGCT GCTGGAATAC CTGGGGGATG ACAGTCAGGT CATAGAGGAG ACCAGCACTG AGCAGACTGA TCAACACAGT CAGGATGCCT ATTGGCCACA GCACCCGGCG CTGGATATCG ATAAGGGGCT GCAGCTGGTG CAGAACTCGG CGCGTCTCTA CCGGCGGATA TTCGAGCGTT TCTATACGGG TCAGTCCCGC TGCGCGGAGC TTATCGCCAC CGCACAGCGT GAGGGCAAGC AGGAGGAGGC GGTGCGTTAC GCCCACACCC TCAAAGGGGT GGCCGGTAAC CTCTGCTGCC CCGAGCTGGT GGCCCTGGCC AAGCAGGTGG AGCAGACTCT CAGCGATTCG ATCGAGGCCG ATGTGACTGA GGCGCTGACT CAGATGGGCG AGCTGTTAGA CAGCCTGTGC ACCACCATAG GTGACTGGCT CAGTCAGACC GGGGCCGAGA CGCTGCCGCA AGAAGATGGC GCCGAGGCGG GGGCGACTGC CGATGCGCCT CCCATGTCGG CCCAGGAGCT GGATGCCGCC ATTAAGGAGC TGCTCAAGAT GCTGGAGGAG GCGGACGCCG AGGCGGTGGA GAAGCTACAG GCGATCCGCG ATCGTCTGCC AACCTCGCTG GCCAACAAGA TTGCGCCCGT GCTCAACATG GTGAACGCCT ATCAGTTTGA CGAGGCGATC GAGCTGGTGG AGGAGATCTT TAGCTAG
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Protein sequence | MDMSRLRTFR SRIIVQIALP LIAIMAMVLS LIAWFNYRAE ESYLYGDLEK QAEMVASRVH HFLSFAEEDT RTFADLLGQM SRDQLVHQDG ELKALLTRRL ERQSDFYASA IAFRPSLTPN QQPYAPYVYR DQDGVKFLDI GADSYDYTDG QWAWWSEAID KPQGYWSLPY FDEGAGNILM ITFSHPFGPS SPYWGVVTVD LALDALPAMA GIDADRMLVL DDKGRLIYHK DAQLLMSQGT DKWLAPSNDN GDFITLLQSA KSGNSRMLAA DGQAYLASVG VVPKLNWRVV IMTQEDKLSH QLYMGLSSLV LTLLLISAVL YLTGYLTARR LSLPIERLAA GIVAFGAGKT KHIEGTRGAV TEVETLTDKF NELAEVLAQR EQALLDSRGN RFAKLIDGMS DKSFYCSLEP DGQIAQVSAG VEKVLGVSPD LLKRKYQRMF SDNPINEANW EYMDSALQGN SVPPHQVEMI AANGSVRRLD LFMQPLLSDN GELLSIEMLF NDVTEQFSAA AWSNAVLESA PEAMLIVDEQ GQVVFSNSRC QQLFGYDAQQ MLALNVDQLV PDSVKHHEAL RAKFIGEGVD RRMGLGLGKT LKAKKADGSL FPVEISLGLL PADSDGLRQV AASIRDMTEE LATAKRIKDS ESRFRGLVGN IPGAVYRTRL GEQWVMEYVS DNIAEITGYP AADFIENKKR VFASLILEAD REATDTAINK GIAEQQSFEV QYRIQHRDGS LRWVHEKGKA SYDDEGNALW FDGSIQDVTQ SKLAQEKIAQ SQQQLETITE SIPNTVYQLR WIANDQRYFT FLSRACITTL GFHRDQLLAN FDLVADCIIE SERARIIRAL SGESASGLKW IEEFRYQHPT GEQRWLQAGA RGDRQDDGSI VWNGYLMDIS ERKQMDRELA KREAHFRALF DNAGIGIVNV DDRGVILDCN EQFSQYLQLP IERLKGSLFF DYQDPEQGLE AKNSFKHLMG DGADSVKLEI RLLNQAGEAR WMDVNMTGLS DKQGEYRSAV LSMADISSLK LLSEELTQAK DVADAASKAK SDFLANMSHE IRTPMNAIIG MSQLCLQTSL DKKQQNYVEK IDRASKSLLG IINDILDFSK IEAGKLDIEA VPFQLDTMLE DLSDMFSVKA ADKQLELLFA VAPNIPRHLV GDPLRLSQVL INLMNNAIKF TEQGEVMLSI SQLVREDEEI LLKFSVRDNG IGLTEEQRGK LFQSFSQADS STTRKYGGTG LGLAICKQLV ELMGGEIGVE SQFGNGSTFF FSVRFKVADN QLIKVAQELE GMRILVADDN ATARDILRST LESMGFTVDT VRSGAEALSR CQETDYGVAL IDWRMPEMDG LETARRLLSE RTNPPKTLIV SAHADGDFID KAEQAEISGY ITKPISASRL LDGIMSALGK QGAMPVRRKG SEVSPALLAQ LKGKRILLVE DNEMNQEVAS EFLEQVGVIL SIAENGQVAL EKLAMQSFDL VLMDCQMPVM DGYQATAELR KRPELADLPV IAMTANAMAG DKEMCLRAGM NDHIAKPIEV SLLYKTLLEY LGDDSQVIEE TSTEQTDQHS QDAYWPQHPA LDIDKGLQLV QNSARLYRRI FERFYTGQSR CAELIATAQR EGKQEEAVRY AHTLKGVAGN LCCPELVALA KQVEQTLSDS IEADVTEALT QMGELLDSLC TTIGDWLSQT GAETLPQEDG AEAGATADAP PMSAQELDAA IKELLKMLEE ADAEAVEKLQ AIRDRLPTSL ANKIAPVLNM VNAYQFDEAI ELVEEIFS
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