Gene Shew_3193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3193 
Symbol 
ID4921583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp3802344 
End bp3804959 
Gene Length2616 bp 
Protein Length871 aa 
Translation table11 
GC content53% 
IMG OID640164803 
Productendonuclease/exonuclease/phosphatase 
Protein accessionYP_001095318 
Protein GI127514121 
COG category[R] General function prediction only 
COG ID[COG2374] Predicted extracellular nuclease 
TIGRFAM ID[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00309211 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0976082 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAATG TTAAAAAGTT GTCAGTGCTT GCACTGTCAA TAGCCGCGGC TTTGCCCGTT 
TCTGCGAAAG CCGACCTGCT GATCAGCGAG TATGTTGAAG GCAACAGCAA CAATAAGGCG
ATCGAACTGT ACAATTCAGG CGACGCCGCC TTAGATCTTA CCGGCTACAA GCTGGTGCGC
TACAAAGATG GCGATACCAA TGCCTTAGAT ATGGTCGCCC TAGACGGTCT CACCATAGAT
GCCAAAAAGC TCAAAGTGAT CTTACACCCA AGTGCCGAAA TCGCCCTGGA TAGCGATGTC
GACAGCAGCA CGGGTAATCT CTATTTCAAC GGCGGTGATG CCGTAGCACT GGTCAAAGAC
GGTGCCGTGG TAGACATCAT AGGTGCCGTG CCTACGCCTA GTGGCTGGGG CATGAACGTC
ACTATGCAGC GCAACACAGA TGCCCTTGTT GCATCAAACG TCTTCGTCGA AAGCCAGTGG
AAAGTATTGC CTGTCGATAC TTTTACCGGC CTGGGTAACC TAGATGGTGC CAGCGCACCA
ACCGAACCTG AAGCTCCAGC CTTCACCTGC ACCGGCGCTA AGATCACACC AATTTACAGC
GTTCAGGGTG CAGGCAAGTC TAGCCCACTG ATCGCCGACG GCGAGTATGC CTCTAAAGAG
GAAGTGACGA TTCGCGGTGT GGTAACCGCT CGTGGCGACA GCCTGTTCAA GGGCTTCTAC
CTGCAAGAAG TTGAGGGTGA CAACTCGCCT TACACTTCTG ACGGTATCTT TGTCTTCTTA
GGCGAAGCGG CCGGCGAAGA GATCCAGCCT GGCGTTGAAG TCTGTGTTCA AGGTCTGGTG
AAAGAATACT ATGGCCTGAC CCAAGTCGAT ATCAAGGCCG ACAAGAAGAT CGAAGTAGGT
GAGAACGTAG GCGCGCCTGC TGCTCAACCT TTCTATGTGG CCGACGGCGA GAGCCTGGGT
GATGCGCTAG AGCGTTTCGA AGGCATGCAT GTGGTACTCG ATGCCGGTAG CGACATGAAA
GTCAGCCGTA CCTTCAGCTA TGATTACGCC GCCCGTCGTA ACAACATGAT GTTGTCCCAC
AAGGCGCCGC TGATGAAGGC GACCCAGCTC TATCCAGCGA TGAGCGATGA AGCGATTGCG
CTGGAAGCAC AAAACCGCGC TAACCAGCTG TTTATCGAGT CAGACTATAA GGCGAAAGAT
GGCGAAGTCC CTTACTTCCC AACCTTCAAT GCCGAGAACG GTTATATCCG TGTTGGCGAC
CAACTGACTA ACCTTCAAGG TGTGGTGAGC TACAGCTATA ACGAATACCG CTTGGTGGCA
ACCAACGAGA TCGTGGCGGG TGACTTCATT CGCGGCGATG ATCGCAGCGA TGCACCAGCC
ATTGCCACTA AGGGTGATAT CCGTGTAGCC AGCTTCAACG TACTGAACTT CTTCAACAAT
GCGGTTGGTG GTGACGATAC GCCTGCCGAT AACCGTGGTG CTAACACCGA AGAAGAGATG
CTGCTGCAAC GCACTAAGAT AGTGAATGCC ATCACCGCCA TGAACGCCGA CATCGTTGGC
CTGATGGAGA TAGGTAACAA CGGCTTTGGC GAGAAGAGTG CGATTCAAAA CCTACTCGAT
GCATTAAATG CCGAACTCAG CGATGCCGAT GCCTATAGCT TCGTCGAGAT CAACGATGCC
GATAAATACC AAGGTAAGTT TGTCGGTAGC GATGCTATCA CTGTGGGCAT GCTGTACCGC
GCCGCTAAGG TGACACCGAG TGGTGATGCC TTCTTGATCG CCACACCTGA GCAACACGCT
ACCGCAGGCG TAGTGACTCG CGGCGAAGGC GACAAGGCGG AACTCAGCCC AGCGTTCGAT
AAGTATCAAC GTCACAGCCT AGGTCAAACC TTCAAGATCC ATGACGAGCA GTTAACTGTC
GTTGTGAACC ACCTCAAGTC TAAGGGCTCA GGTTGTGTCG AAGATTGGGC TAACTATGAA
GACAACAGCG ATCCAGCGGA TCTTCAGGGC AAGTGTAACG AGTTCCGTGT ATCGGCCGCT
AAGGTCATTG GTGATGCGCT GCAAGACGTG AAGGGTGATC TCTTAGTGAT CGGCGACATG
AACGCCTACG GCAAAGAAGA TCCTATCCGC GTATTGACCG ACTTCGATGC CGCAAACAGC
GATCGTGACA TCATGACCGC CTCTTGGACA ACGCTAGATG GCAAGGTATA TGAGCGTGAA
GGTAGCAAGA TTGAGAAGGG CTATGGCCTG ATCAACCTAA ATACCAAGGT TCATGGCCCA
GATACTTACT CATACAGCTA CAACGGCGAG TTGGGTAACC TGGACCACGC TTTGGCTAAC
ACTAGCCTGG CCGAGCGCGT ACTGGATATT CAAGACTGGC ACATCAACGC GGTCGAATCG
AACCTGTTCG AATACGGCAG CAAATACACA GGTGAGCTTG CCAAGTCTGA GAATGCTTTC
TCTGCATCGG ATCACGACCC TGTGATCGTG GCGCTAAGCT ACCCAGTGCC TAAGCCAGAG
CCTAAGCCTG AGCCGGAAGA AAAGGATGAC GGCGGTTCAC TGGGTTATCT AGGACTGATG
TTACTTGGAC TGGCCGGATT GCGTCGCCGC AACTAG
 
Protein sequence
MDNVKKLSVL ALSIAAALPV SAKADLLISE YVEGNSNNKA IELYNSGDAA LDLTGYKLVR 
YKDGDTNALD MVALDGLTID AKKLKVILHP SAEIALDSDV DSSTGNLYFN GGDAVALVKD
GAVVDIIGAV PTPSGWGMNV TMQRNTDALV ASNVFVESQW KVLPVDTFTG LGNLDGASAP
TEPEAPAFTC TGAKITPIYS VQGAGKSSPL IADGEYASKE EVTIRGVVTA RGDSLFKGFY
LQEVEGDNSP YTSDGIFVFL GEAAGEEIQP GVEVCVQGLV KEYYGLTQVD IKADKKIEVG
ENVGAPAAQP FYVADGESLG DALERFEGMH VVLDAGSDMK VSRTFSYDYA ARRNNMMLSH
KAPLMKATQL YPAMSDEAIA LEAQNRANQL FIESDYKAKD GEVPYFPTFN AENGYIRVGD
QLTNLQGVVS YSYNEYRLVA TNEIVAGDFI RGDDRSDAPA IATKGDIRVA SFNVLNFFNN
AVGGDDTPAD NRGANTEEEM LLQRTKIVNA ITAMNADIVG LMEIGNNGFG EKSAIQNLLD
ALNAELSDAD AYSFVEINDA DKYQGKFVGS DAITVGMLYR AAKVTPSGDA FLIATPEQHA
TAGVVTRGEG DKAELSPAFD KYQRHSLGQT FKIHDEQLTV VVNHLKSKGS GCVEDWANYE
DNSDPADLQG KCNEFRVSAA KVIGDALQDV KGDLLVIGDM NAYGKEDPIR VLTDFDAANS
DRDIMTASWT TLDGKVYERE GSKIEKGYGL INLNTKVHGP DTYSYSYNGE LGNLDHALAN
TSLAERVLDI QDWHINAVES NLFEYGSKYT GELAKSENAF SASDHDPVIV ALSYPVPKPE
PKPEPEEKDD GGSLGYLGLM LLGLAGLRRR N