Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3193 |
Symbol | |
ID | 4921583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3802344 |
End bp | 3804959 |
Gene Length | 2616 bp |
Protein Length | 871 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640164803 |
Product | endonuclease/exonuclease/phosphatase |
Protein accession | YP_001095318 |
Protein GI | 127514121 |
COG category | [R] General function prediction only |
COG ID | [COG2374] Predicted extracellular nuclease |
TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00309211 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0976082 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATAATG TTAAAAAGTT GTCAGTGCTT GCACTGTCAA TAGCCGCGGC TTTGCCCGTT TCTGCGAAAG CCGACCTGCT GATCAGCGAG TATGTTGAAG GCAACAGCAA CAATAAGGCG ATCGAACTGT ACAATTCAGG CGACGCCGCC TTAGATCTTA CCGGCTACAA GCTGGTGCGC TACAAAGATG GCGATACCAA TGCCTTAGAT ATGGTCGCCC TAGACGGTCT CACCATAGAT GCCAAAAAGC TCAAAGTGAT CTTACACCCA AGTGCCGAAA TCGCCCTGGA TAGCGATGTC GACAGCAGCA CGGGTAATCT CTATTTCAAC GGCGGTGATG CCGTAGCACT GGTCAAAGAC GGTGCCGTGG TAGACATCAT AGGTGCCGTG CCTACGCCTA GTGGCTGGGG CATGAACGTC ACTATGCAGC GCAACACAGA TGCCCTTGTT GCATCAAACG TCTTCGTCGA AAGCCAGTGG AAAGTATTGC CTGTCGATAC TTTTACCGGC CTGGGTAACC TAGATGGTGC CAGCGCACCA ACCGAACCTG AAGCTCCAGC CTTCACCTGC ACCGGCGCTA AGATCACACC AATTTACAGC GTTCAGGGTG CAGGCAAGTC TAGCCCACTG ATCGCCGACG GCGAGTATGC CTCTAAAGAG GAAGTGACGA TTCGCGGTGT GGTAACCGCT CGTGGCGACA GCCTGTTCAA GGGCTTCTAC CTGCAAGAAG TTGAGGGTGA CAACTCGCCT TACACTTCTG ACGGTATCTT TGTCTTCTTA GGCGAAGCGG CCGGCGAAGA GATCCAGCCT GGCGTTGAAG TCTGTGTTCA AGGTCTGGTG AAAGAATACT ATGGCCTGAC CCAAGTCGAT ATCAAGGCCG ACAAGAAGAT CGAAGTAGGT GAGAACGTAG GCGCGCCTGC TGCTCAACCT TTCTATGTGG CCGACGGCGA GAGCCTGGGT GATGCGCTAG AGCGTTTCGA AGGCATGCAT GTGGTACTCG ATGCCGGTAG CGACATGAAA GTCAGCCGTA CCTTCAGCTA TGATTACGCC GCCCGTCGTA ACAACATGAT GTTGTCCCAC AAGGCGCCGC TGATGAAGGC GACCCAGCTC TATCCAGCGA TGAGCGATGA AGCGATTGCG CTGGAAGCAC AAAACCGCGC TAACCAGCTG TTTATCGAGT CAGACTATAA GGCGAAAGAT GGCGAAGTCC CTTACTTCCC AACCTTCAAT GCCGAGAACG GTTATATCCG TGTTGGCGAC CAACTGACTA ACCTTCAAGG TGTGGTGAGC TACAGCTATA ACGAATACCG CTTGGTGGCA ACCAACGAGA TCGTGGCGGG TGACTTCATT CGCGGCGATG ATCGCAGCGA TGCACCAGCC ATTGCCACTA AGGGTGATAT CCGTGTAGCC AGCTTCAACG TACTGAACTT CTTCAACAAT GCGGTTGGTG GTGACGATAC GCCTGCCGAT AACCGTGGTG CTAACACCGA AGAAGAGATG CTGCTGCAAC GCACTAAGAT AGTGAATGCC ATCACCGCCA TGAACGCCGA CATCGTTGGC CTGATGGAGA TAGGTAACAA CGGCTTTGGC GAGAAGAGTG CGATTCAAAA CCTACTCGAT GCATTAAATG CCGAACTCAG CGATGCCGAT GCCTATAGCT TCGTCGAGAT CAACGATGCC GATAAATACC AAGGTAAGTT TGTCGGTAGC GATGCTATCA CTGTGGGCAT GCTGTACCGC GCCGCTAAGG TGACACCGAG TGGTGATGCC TTCTTGATCG CCACACCTGA GCAACACGCT ACCGCAGGCG TAGTGACTCG CGGCGAAGGC GACAAGGCGG AACTCAGCCC AGCGTTCGAT AAGTATCAAC GTCACAGCCT AGGTCAAACC TTCAAGATCC ATGACGAGCA GTTAACTGTC GTTGTGAACC ACCTCAAGTC TAAGGGCTCA GGTTGTGTCG AAGATTGGGC TAACTATGAA GACAACAGCG ATCCAGCGGA TCTTCAGGGC AAGTGTAACG AGTTCCGTGT ATCGGCCGCT AAGGTCATTG GTGATGCGCT GCAAGACGTG AAGGGTGATC TCTTAGTGAT CGGCGACATG AACGCCTACG GCAAAGAAGA TCCTATCCGC GTATTGACCG ACTTCGATGC CGCAAACAGC GATCGTGACA TCATGACCGC CTCTTGGACA ACGCTAGATG GCAAGGTATA TGAGCGTGAA GGTAGCAAGA TTGAGAAGGG CTATGGCCTG ATCAACCTAA ATACCAAGGT TCATGGCCCA GATACTTACT CATACAGCTA CAACGGCGAG TTGGGTAACC TGGACCACGC TTTGGCTAAC ACTAGCCTGG CCGAGCGCGT ACTGGATATT CAAGACTGGC ACATCAACGC GGTCGAATCG AACCTGTTCG AATACGGCAG CAAATACACA GGTGAGCTTG CCAAGTCTGA GAATGCTTTC TCTGCATCGG ATCACGACCC TGTGATCGTG GCGCTAAGCT ACCCAGTGCC TAAGCCAGAG CCTAAGCCTG AGCCGGAAGA AAAGGATGAC GGCGGTTCAC TGGGTTATCT AGGACTGATG TTACTTGGAC TGGCCGGATT GCGTCGCCGC AACTAG
|
Protein sequence | MDNVKKLSVL ALSIAAALPV SAKADLLISE YVEGNSNNKA IELYNSGDAA LDLTGYKLVR YKDGDTNALD MVALDGLTID AKKLKVILHP SAEIALDSDV DSSTGNLYFN GGDAVALVKD GAVVDIIGAV PTPSGWGMNV TMQRNTDALV ASNVFVESQW KVLPVDTFTG LGNLDGASAP TEPEAPAFTC TGAKITPIYS VQGAGKSSPL IADGEYASKE EVTIRGVVTA RGDSLFKGFY LQEVEGDNSP YTSDGIFVFL GEAAGEEIQP GVEVCVQGLV KEYYGLTQVD IKADKKIEVG ENVGAPAAQP FYVADGESLG DALERFEGMH VVLDAGSDMK VSRTFSYDYA ARRNNMMLSH KAPLMKATQL YPAMSDEAIA LEAQNRANQL FIESDYKAKD GEVPYFPTFN AENGYIRVGD QLTNLQGVVS YSYNEYRLVA TNEIVAGDFI RGDDRSDAPA IATKGDIRVA SFNVLNFFNN AVGGDDTPAD NRGANTEEEM LLQRTKIVNA ITAMNADIVG LMEIGNNGFG EKSAIQNLLD ALNAELSDAD AYSFVEINDA DKYQGKFVGS DAITVGMLYR AAKVTPSGDA FLIATPEQHA TAGVVTRGEG DKAELSPAFD KYQRHSLGQT FKIHDEQLTV VVNHLKSKGS GCVEDWANYE DNSDPADLQG KCNEFRVSAA KVIGDALQDV KGDLLVIGDM NAYGKEDPIR VLTDFDAANS DRDIMTASWT TLDGKVYERE GSKIEKGYGL INLNTKVHGP DTYSYSYNGE LGNLDHALAN TSLAERVLDI QDWHINAVES NLFEYGSKYT GELAKSENAF SASDHDPVIV ALSYPVPKPE PKPEPEEKDD GGSLGYLGLM LLGLAGLRRR N
|
| |