| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3186 |
|---|
| Symbol | |
|---|
| ID | 4921681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3792254 |
|---|
| End bp | 3793255 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640164796 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001095311 |
|---|
| Protein GI | 127514114 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTCCA GAATTCTATC TCCTAAAACT CAATCTACCG AAGCAATGCA GCACGTACCT
AATGTTTCGG TCATCGTTTT TAATGGATTC AGCCCGTTTC ATATTTCTGT CCCAAGTATC
GTGTTCGGGC GTGATACTCT GAATGAAGCC TTCTTCAACC TACAGTTTAT TGCGGGAGAG
GAAGGTTCAA TTATGTCTGA TATAGGGATG GAGATTCACG CCCGAGCCAA GCTCGATACA
CTGGAGAAGG CTGACATAAT CATTGTTCCT TATTGGCGGA CGGTTGATGA ACGACCAAAT
GATCAGCTAA TTGAGGCGTT ACGTCTTGCT CATGAGAGAG GAACATTGAT AGTCGGTTTG
TGTCTTGGTG GCTATGTTCT GGCTTTCGCT GGGTTATTAG ATGGAAAGCG TGCCGCAACT
CACTGGGAAC TAGAGCAAGA TTTCACTCAA CGTTTTCCGG AAACGTTACT CGATACCAAT
GCGTTATATG TAGAAGATGG TGGAGTGATT ACATCCGCTG GCACCGCAGC AGGTATTGAT
TGTTGTTTGT TCGTTTTCCG TAAATATTAC AGCAGTGCAA TCGCGAACCG TATTGCCCGA
AGAATGGTGG TTCCACCATA TCGAGACGGA GGGCAAGCAC AATTTATTGA ACAACCCATA
CCGATAACAA CATCCGATTT ACGCATCAAT GAGTTGATGG AGCGAATTAG AAACGATATT
GGTCACAAGT ATACTCTCGA TGAACTCGCG GAGTCAGTGA TGATGACTCG CCGTACCTTT
ACCCGTAAAT TTCATAAGGC AACAGGGATG GCCTTTGGAG AATGGCTGGC TTCTGAGCGA
CTCAACCTAG CTCAGGAGCT GCTTGAGTCT ACTGATCTAA CCATTGAGCA AATAGTGACT
AAAACCGGAT TCAGTTCGGT GTTTATCTTC CGTGATAAAT TCAAAGGACG TTATGCGGTC
ACTCCAAACC GTTGGAGAAA AACGTTTCAT GAGCAGAAAT AA
|
|---|
| Protein sequence | MSSRILSPKT QSTEAMQHVP NVSVIVFNGF SPFHISVPSI VFGRDTLNEA FFNLQFIAGE
EGSIMSDIGM EIHARAKLDT LEKADIIIVP YWRTVDERPN DQLIEALRLA HERGTLIVGL
CLGGYVLAFA GLLDGKRAAT HWELEQDFTQ RFPETLLDTN ALYVEDGGVI TSAGTAAGID
CCLFVFRKYY SSAIANRIAR RMVVPPYRDG GQAQFIEQPI PITTSDLRIN ELMERIRNDI
GHKYTLDELA ESVMMTRRTF TRKFHKATGM AFGEWLASER LNLAQELLES TDLTIEQIVT
KTGFSSVFIF RDKFKGRYAV TPNRWRKTFH EQK
|
|---|
| |