| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3165 |
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| Symbol | |
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| ID | 4921942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3768665 |
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| End bp | 3769345 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164775 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001095290 |
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| Protein GI | 127514093 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.600792 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGATG CAATCAATTC CTCGCTGTTT ACGCCCATAG GTGAAGATGG ACTCATAGGT
ATCTACCTGA TCCTCAATGG CTTAAAGGTG ACACTGATAG TGACCCTGTT CGCCATGATC
TTGGGTGCCA TACTAGGCGT AGCCACCACA TTGATGAAGA TGTCGAGCCG CTGGTATCTG
CGCTGGCCGG CCAACCTCTA TGTGGGCGTG ATACGCGGCA CCCCAGTGGT GGTGCAGCTG
GTGATCCTCT ACTTTATCGT GCTGGCCACC TGGGATGTGG ACAAGGTGAG CGCGGCCATC
ATTGCCTTCG GCCTCAACAG CGGTGCCTAC ATCTCTGAGA TCATCCGCGC CGGCATACAG
GCGGTGGATA AGGGGCAGAC GGAGGCGGCG CGCTCCCTCG GCCTGTCGCA GGCGGTGACC
ATGAAGGAGG TGATCCTGCC TCAGGCGATC AAGAACATTC TTCCCGCCCT GGGTAACGAG
TTTATCGTGC TCTTGAAAGA GACCGCGGTG ATAGGCTTCA TCGGCGGCGT GGATCTGATG
CGCTCGGGCG AGATCATCCG TAGCCGCACC TTCGAAGACA GCGTGCCCCT GTTTACCTGT
GCACTCATCT ACCTGGCGTT GACCTATAGC TTCACCTTTA TGTTGTCGAA GTTTGAGAAG
AGGCTTAAGC AAAGTGATTA A
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| Protein sequence | MLDAINSSLF TPIGEDGLIG IYLILNGLKV TLIVTLFAMI LGAILGVATT LMKMSSRWYL
RWPANLYVGV IRGTPVVVQL VILYFIVLAT WDVDKVSAAI IAFGLNSGAY ISEIIRAGIQ
AVDKGQTEAA RSLGLSQAVT MKEVILPQAI KNILPALGNE FIVLLKETAV IGFIGGVDLM
RSGEIIRSRT FEDSVPLFTC ALIYLALTYS FTFMLSKFEK RLKQSD
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