| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3158 |
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| Symbol | |
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| ID | 4921996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3758811 |
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| End bp | 3759752 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164768 |
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| Product | polysulphide reductase, NrfD |
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| Protein accession | YP_001095283 |
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| Protein GI | 127514086 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3301] Formate-dependent nitrite reductase, membrane component |
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| TIGRFAM ID | [TIGR03148] cytochrome c nitrite reductase, NrfD subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCTT TTCATTTCGA AGGCCTGGTA TGGCATTGGC CTATCGCCAT ATACCTCTTC
CTCGCCGGAC TGTCAGCTGG GGCGGTATTT TTCGCCATCA TGCTGAAACA TTTCAAGTTA
TCCCATGAGG CCTGGCATTC GCCCTTCGTG CAGGCGGCGG CCATCATAGC GCCTGTCGCC
GTGTTTGGTG GCCTGGGGAT CCTGGTATTC GACCTCACCC GGCCACTGGA TTTCTGGAAG
ATCTTGGTGT TCTACAACAC CAGCTCTGTG ATGTCCATGG GGGTACTGGT GCTGATGGCC
TATCAGCTGG TGCTGTTTGC CTGGATAGCC TGCGTCTTCC AGCGCCGCAT CACTCAGCTG
CTGGGCAAGC GTCTGCCTAT CGCCAACCGG CTGCTGAACT GGCTGGTGAA ACAGGAAGCG
GCAATCACCG GCGTCTTGGT GATCCTCGCC ATCTCGCTTG GGGCCTACAC CGGCTTCCTG
CTGTCGGCGC TGATCGGCTT CCCGCTGCTG AATAACCCGG TATTGCCGCT GCTATTCTTG
ATCTCCGGGC TCTCCTCCGG CGCCGCCGCG ACCCTGCTGG GTGGTGTGCT GCTTCGAGGT
AACCCCAATG GGGTCGAGGT GCGTTTCATC CATGGCATAG AGATCCCGTT GATTTTAGTG
GAGATTGGCC TGCTGTTTAC CTTCTTCGCC GGATTGATCC TCTCTGGCGG TCAGAGTCAG
GTTGCGGCAC TCAACGCCTT GGGCTTCGGC TTCTGGGGAT GGATCTTCTG GGCCGGCGTG
ATCGGTATAG GCCTCACCCT GCCACTGGCC TTCAACCTAT GGATGAAAGT GTCGGCAGAT
CGTAAGTTCG CCTATGTGGC GGTCACCGCC AGCTTCAGCC TGATAGGGGT GTTCTTGCTG
CGCAACTTTA TCCTCTATAC CGGCCAGATG ACGGGGATCT AA
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| Protein sequence | MSAFHFEGLV WHWPIAIYLF LAGLSAGAVF FAIMLKHFKL SHEAWHSPFV QAAAIIAPVA
VFGGLGILVF DLTRPLDFWK ILVFYNTSSV MSMGVLVLMA YQLVLFAWIA CVFQRRITQL
LGKRLPIANR LLNWLVKQEA AITGVLVILA ISLGAYTGFL LSALIGFPLL NNPVLPLLFL
ISGLSSGAAA TLLGGVLLRG NPNGVEVRFI HGIEIPLILV EIGLLFTFFA GLILSGGQSQ
VAALNALGFG FWGWIFWAGV IGIGLTLPLA FNLWMKVSAD RKFAYVAVTA SFSLIGVFLL
RNFILYTGQM TGI
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