| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3120 |
|---|
| Symbol | |
|---|
| ID | 4922083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3707988 |
|---|
| End bp | 3709160 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640164730 |
|---|
| Product | phosphate-selective porin O and P |
|---|
| Protein accession | YP_001095245 |
|---|
| Protein GI | 127514048 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000046634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000572585 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGA AAACGCTAAT TGCCGCAGCA CTGGTCAGCG CATTCGCTAG CCAAGCCGCT
ATCGCCTCTG ATGAGACTCA AGAACTGCGT AAAGTGATCG AACAGCAACA GAAAGTGCTG
AAAGATCTTG AGAAGCGTCT GGAGCAAACT GAGCAGCGTG TAGAGAAGAC AGCCGACGCC
GTTGAAGAGA GCAGCTCAGC CAAGAGCGCG ACAACTATCG GTGGTTACGG TGAACTTCAC
TACAACAACA TCACTGACAA CAAATCAGGT AAAGACAAGA AAGAGTTCGA CTTCCACCGC
TTCGTGCTGT TCTTCGGCCA CGAGTTCACC GAAAAGACAC GTTTCTTCTC TGAGCTGGAA
GTTGAGCACT CTATCTCTGG CGAAGGCCAA AACGGTGAAG TCGAGCTAGA GCAGGCTTAC
ATCGAACACG ATTTCAACGA CATGCTGACT GCTAAGGCGG GTCTGTTCCT GATGCCAGTG
GGTATCATCA ACGAAACTCA CGAGCCACCA GCATTCTACG GCGTTGAGCG TAACCCAGTT
GAGAAAAACA TCCTGCCTGC CACTTGGTGG GAAGCGGGTG CCAACCTGAA CATCAAGGCA
GCCCCAGGCC TGGCCTTCGA CGCAGCGGTC ACCTCTGGCC TGAACGTTGG CGACGACTAC
AAGATCCGTG GCGGTCGTCA GAAGGTTTCT GAAGCGAAAG CCGAAGATCT GGCTTACACG
GCACGCGTTA AATACACCGC CGTTCCAGGT CTAGAGCTGG CTGCAACTGT GCAGTACCAA
TCTGACCTGA CTCAAGGCCG TGGCGATGTC GATACCGCTT CTGCGACCCT GATGACAGCA
CACGCTATCT ACACCATCGA AAACTTCACC ATCAAGGCAC TATACGCTCA GTGGGATATC
GACGGTAAAG AAGCCGAAGC ACTTGGCCGT GACAAGCAGA AAGGTTACTA CATCGAGCCT
TCATACCGCT TCAACGAAAG CTTCGGTGTG TTCGCACGTT ACAATGCCTA CGACAACGAA
GCCGGTAACG GTGTTGACTC AGAGATCACC CAGACTAACG TCGGTGTGAA CTACTGGTTG
CATGAAAACG TTGTCTTCAA AGCCGACTAC GAAAAAGTTG GCGGCGCGAA AGATGCCGAC
GGTTTCAACC TAGGCGTTGG CTACCAGTTC TAA
|
|---|
| Protein sequence | MMKKTLIAAA LVSAFASQAA IASDETQELR KVIEQQQKVL KDLEKRLEQT EQRVEKTADA
VEESSSAKSA TTIGGYGELH YNNITDNKSG KDKKEFDFHR FVLFFGHEFT EKTRFFSELE
VEHSISGEGQ NGEVELEQAY IEHDFNDMLT AKAGLFLMPV GIINETHEPP AFYGVERNPV
EKNILPATWW EAGANLNIKA APGLAFDAAV TSGLNVGDDY KIRGGRQKVS EAKAEDLAYT
ARVKYTAVPG LELAATVQYQ SDLTQGRGDV DTASATLMTA HAIYTIENFT IKALYAQWDI
DGKEAEALGR DKQKGYYIEP SYRFNESFGV FARYNAYDNE AGNGVDSEIT QTNVGVNYWL
HENVVFKADY EKVGGAKDAD GFNLGVGYQF
|
|---|
| |