Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3114 |
Symbol | |
ID | 4922219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3697423 |
End bp | 3698811 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640164724 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_001095239 |
Protein GI | 127514042 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000842018 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACTTG CACGCAATAT CCTATTGGTC GACGACGAGG CCTCCTGGCT GCGCACCCTG GCGGTGACCC TCAACCGTCT GGTGCCCGAG GCAGAGATAG ACACCTGCGT CGACAGTCGC CAGGTACTCA ATCGCCTGCA GGTGGGCGAC TATGCTCTGG TGCTGCTGGA CCTCACTATG CCCTTCCACT CAGGTGAAGA ACTGCTAGGG ATGATCCGCG CCGAACACCC CAACACCCGG GTGATCATAG TCACGGGCGT CAACGAGGTG GATACCGCGG TGCGCTGCAT CAAGCATGGC GCCTACGACT ACTTCATCAA GACAGACAAT GTCAGCGACC TGGCCCATAC GGTGCGCCGC GCGCTCGAGG TGGTGGGGCT TGAGCGCAAC TATCTGCATA TCAAGGAGCG CTTTCTCAGC CGCACCTTGG ACAACCCCAA GGCCTTCAAC AACATACTCA CCTGTGAACC GGTGCTGCTG GATCAGTTTC GCTATCTCGA GGCCGTCGCC TTCAGCCCAG AGCCTCTGTT GATCCACGGC GAGAGCGGTA CCGGCAAGAG CGAGTTTGCC CGCTCCTGCC ATCAGCTCTT CAGCCCTGAG CAACCCTTCG TCAGCCTCAA CCTTGCGGGC ATCAACAGCG ACACCTTCGA GCTTAAGCTG TGTGGCCGCC TTAGTCATAA GCCAAACGGT GAGGTCGATG CGGTTACCGG CATGCTCCAT CAGGCAGGCA GTGGCGTGCT TTACCTGAGC GAGATAGGCG CCCTGCCCCT GAGCGCCCAG ATCACCTTGC TGGAGCTAAT CGAGAGCCGA AGCTACTCGC CCCAGGGCAG CGACAGCCGT TTCCCCATCA AGTGTAAGTT TGTGGTCTCG ACCCAGGACG ATCTGCTGAC CCTCAACAAG GCGGGTGAGT TTCGCAGCGA TCTCCTCTAC CGCCTGCGCG CCCATAAGAT AAGGCTGCCG CGCCTGGCCG AGCGGCCGCT GGACATCGCC ATGCTGATCA ACCACTTCAT CGCCGAGGCC GCCGAGGAGA TGTCCCTGAG CGCGCCGCAG CAACCCAGGG ATCTGGCACC TAAGCTGCTG GATTACGACT TCCCCGGTAA CCTCAACGAG CTCAAGGGGA TGGTGTTCGA TGCCGTCAGC CGCAGCGACG GCGTTACCCT CAATATCTCC CCCTTCATGG AGGCGATAAA GGAACATAAG TCGCTGGACG CCGCCCCCGG GGATCACATC ATCTTCCCTA AGTCGCTGCC CACCCTGGCA CAGATGAATC AGGCCTTGAT CGACGAGGCC ATGAGCCGCA CCGCCAACAA CCAGACCGCC GCCGCGCAGA TACTGGGGAT CAGTCAGAGC GCTCTCAGCC GGCGCCTGAC CAAGGGGCAG GAACACTAG
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Protein sequence | MKLARNILLV DDEASWLRTL AVTLNRLVPE AEIDTCVDSR QVLNRLQVGD YALVLLDLTM PFHSGEELLG MIRAEHPNTR VIIVTGVNEV DTAVRCIKHG AYDYFIKTDN VSDLAHTVRR ALEVVGLERN YLHIKERFLS RTLDNPKAFN NILTCEPVLL DQFRYLEAVA FSPEPLLIHG ESGTGKSEFA RSCHQLFSPE QPFVSLNLAG INSDTFELKL CGRLSHKPNG EVDAVTGMLH QAGSGVLYLS EIGALPLSAQ ITLLELIESR SYSPQGSDSR FPIKCKFVVS TQDDLLTLNK AGEFRSDLLY RLRAHKIRLP RLAERPLDIA MLINHFIAEA AEEMSLSAPQ QPRDLAPKLL DYDFPGNLNE LKGMVFDAVS RSDGVTLNIS PFMEAIKEHK SLDAAPGDHI IFPKSLPTLA QMNQALIDEA MSRTANNQTA AAQILGISQS ALSRRLTKGQ EH
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