| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3082 |
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| Symbol | |
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| ID | 4922325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3660367 |
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| End bp | 3661815 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164692 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001095207 |
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| Protein GI | 127514010 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTGTA AACATCCAAG GGTCGATGAT GCCCATGTGG ACTTTCTACC CGAGAACAAA
CTGCTGCTCA ACGCGGTAGG CGAAGGGATC TACGGCTTCG ACCTAGAGGG CAACGCCGTC
TTTATCAACC CTGCCGCCGA GCGGATGACG GGCTGGAAGG CCGAGGAGCT GCTGGGTAAG
AACATCCACG ACTGTCACCA CCACAGCCAC GCCGATGGCA ACCCCTATCC CCAGGAAGAG
TGCCCCATCT ACAACACGCT GCACGACGGC ATTGCCCGGG AGATCAGCCA TGATCTCTTC
TGGCGCAAGG ACGGCAGCAG CTTTCCGGTG CACTACACCT CGACCCCCGT CTACAAAAAC
GACCGTCTTA TCGGCGTGGT CGCGATATTT CGCGATATTA GCATTCAGAA GCAGACAGAA
GCCTCCCTCA GGGAGGCACT GAAACAGGTA CAGGCCCTGT CGGAGAAGCT GGCCAACGAG
AATGACTACC TGCTCACCGA GCTGGCCAGC CATCGTCAGG AGGTCAATAT CTCGGGCGAG
AGCGAGACGA TACAGTCGCT GATCCAGCAG ATAAAACTGG TGGCCAACAC CAGCAGTACC
GTGCTGATTA ACGGCGAGAA CGGCACAGGT AAAGAGTTAG TGGCCCGCAA CATACATGCG
CTCAGCGATC GCAGCGATCA GCCCCTGGTG AGCGTCAACT GCGCCGCCTT CTCCCCCACC
CTGCTAGAAA GCGAGCTCTT CGGCCATGAG AAGGGCGCCT TCACCGGCGC CACCAGCCGC
CGCAAGGGTC GATTCGAGCT GGCCCACCAG GGCACGCTAT TTCTCGATGA GGTGGCCGAG
CTTTCCCTCG AGGCCCAGTC TAAGCTGCTC AGGGTGATCC AGGAACAGGA GTTCGAGCGA
GTGGGCAGCA GCACTCCCAT CAAGGTGGAT ATCCGCCTGG TTACCGCCAC CCATCACGAT
CTGCTTAAGC GGGTTGAACA GGGGCTGTTC CGCATGGATC TCTACTATCG CCTCAATGTG
TTCCCCCTGC ATGTGCCGCC CCTGAGGGAG CGGCTGCAAG ATATTCCACT ACTGGTCAGC
GATATCCTGC TCAACCTAAA CCATAAGCTG GGCAAGAAGA TCAAAGGGGT CAGCAAGCAA
GGCATGCAGC ACCTGATGGC CTATCACTGG CCCGGCAACG TGCGTGAGCT GCAGAACGTT
ATCGAGCGTC AGACTATTCT CTGTCACGGT CAGATCCTGC AGATCCCGGC GCTACAGGCC
GAGCCGCAGC CCCAAGACAA GGGGGAGTTT CAGACTCTGC AGCAGGTGGA GGCCGCCCAT
ATCCGCCGCA CCCTGAAGCG GCTCAACTGG CGTATCTCTG GCCCCAACGG CGCCGCCAAC
CTGCTCGGGC TGCCCGCCAG CACCCTAAGA TCCCGCATGC TCAAGCTGGG GATCAAGCGT
CCGGCCTAA
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| Protein sequence | MACKHPRVDD AHVDFLPENK LLLNAVGEGI YGFDLEGNAV FINPAAERMT GWKAEELLGK
NIHDCHHHSH ADGNPYPQEE CPIYNTLHDG IAREISHDLF WRKDGSSFPV HYTSTPVYKN
DRLIGVVAIF RDISIQKQTE ASLREALKQV QALSEKLANE NDYLLTELAS HRQEVNISGE
SETIQSLIQQ IKLVANTSST VLINGENGTG KELVARNIHA LSDRSDQPLV SVNCAAFSPT
LLESELFGHE KGAFTGATSR RKGRFELAHQ GTLFLDEVAE LSLEAQSKLL RVIQEQEFER
VGSSTPIKVD IRLVTATHHD LLKRVEQGLF RMDLYYRLNV FPLHVPPLRE RLQDIPLLVS
DILLNLNHKL GKKIKGVSKQ GMQHLMAYHW PGNVRELQNV IERQTILCHG QILQIPALQA
EPQPQDKGEF QTLQQVEAAH IRRTLKRLNW RISGPNGAAN LLGLPASTLR SRMLKLGIKR
PA
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