Gene Shew_3073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_3073 
Symbol 
ID4922316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand- 
Start bp3648126 
End bp3648794 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content55% 
IMG OID640164683 
Producturacil-DNA glycosylase 
Protein accessionYP_001095198 
Protein GI127514001 
COG category[L] Replication, recombination and repair 
COG ID[COG0692] Uracil DNA glycosylase 
TIGRFAM ID[TIGR00628] uracil-DNA glycosylase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.906111 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAGA TCAGCCAATG GCAAGATTTT ATTGACCAGG AGGCCAAGCA AGCCTATTTT 
GGCCAGTTGC AGGCTTTCGT GCAAGGTGAG CGCGATGCCG GTAAGGCGAT CTATCCGGAA 
AAGGATCAGG TGTTTAGCGC CTTCGAGCTA ACGCCGCTGG ATAAGGTTAG GGTGGTGTTG 
ATTGGTCAAG ACCCTTATCA CGGCGAGGGC CAGGCGCACG GCCTCTGCTT CTCGGTGCAG 
CCCGGGGTGA AGGTGCCGCC ATCTTTGGTG AACATGTATA AGGAGCTGGC CAGTGATATC 
GATGGCTTTG AGATCCCAGA TCATGGCTAT CTGGCGAAGT GGGCAGAGCA GGGCGTCTTG 
ATGCTCAATA CTGTACTCAC GGTAGAGCAG GGTAAGGCGC ACTCCCATGC CAAGGCGGGG 
TGGGAGACCT TTACCGACAA CGCCTTGAGG CAGCTTAATG AGCAGGAGCG CCCGATTATT 
TTCGTGCTGT GGGGCGGCCA CGCCATGAAG AAGAGCAAGC TTATCCAGGC GGAGCAGCAC 
CATCTGGTGA GCGGGCCTCA CCCTTCACCG CTCTCTGCCT ACCGAGGTTT CTTTGGCTGT 
AAACACTTCT CAAAAATCAA CGAGTTGTTA AAGGCCTCTG GCGAGGCGCC TATCGACTGG 
CAGGTATAA
 
Protein sequence
MTEISQWQDF IDQEAKQAYF GQLQAFVQGE RDAGKAIYPE KDQVFSAFEL TPLDKVRVVL 
IGQDPYHGEG QAHGLCFSVQ PGVKVPPSLV NMYKELASDI DGFEIPDHGY LAKWAEQGVL 
MLNTVLTVEQ GKAHSHAKAG WETFTDNALR QLNEQERPII FVLWGGHAMK KSKLIQAEQH 
HLVSGPHPSP LSAYRGFFGC KHFSKINELL KASGEAPIDW QV