| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3062 |
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| Symbol | |
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| ID | 4922662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3635485 |
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| End bp | 3638373 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164672 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_001095187 |
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| Protein GI | 127513990 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACTG AAACCCTCAC TCAGTTAGAG CAGCACGAAC TATTTATCCG TCGTCATATC
GGCCCGGACA GCGCAGATCA GCAAGAGATG CTGAACTTCG TTGGTGCAGA ATCTTTAGAA
GATTTGACAC AGCAGATAGT CCCTGAGTCG ATTCGTCTTG GACGCGATCT TGCCGTTGGC
AGCGCCTGTG GCGAAGCCGA AGGCCTTGCC TCAATTCGCA AGTACGCGGA TAAGAACAAG
GTGTTCAAGA GCTACATCGG CATGGGTTAC TACGGCACTA TCGTGCCAAG CGTGATTCAG
CGTAACGTAT TCGAAAATCC AGGTTGGTAC ACGGCGTATA CCCCATACCA GCCAGAGATC
GCCCAGGGCC GTCTGGAAGC CATCCTTAAC TTCCAACAGC TGTCGATGGA TCTTACCGGT
CTTGACCTGG CTTCAGCCTC TTTGCTGGAC GAAGCCACCG CAGCCGCCGA AGCCATGGCG
CTGGCCAAGC GTGTCTCTAA GGCGAAGAAA GCTAACATCT TCTTCATCGC CGACGATGTG
TTCCCACAGA CTATCGACGT GGTGAAGACC CGCGCCGAAT GTTTCGGTTT CGAAATCGTG
GTTGGCCCAG CCAGCGAAGC GGTTAACTAT GAGCTGTTTG GTGCCTTGTT CCAATACACC
AACCACTATG GTCAAATCAC CGACTTCACC GAGCTGTTTG CCGCGCTGCA AGAGAAGAAA
GCCGTCGTGA CTGTTGCCGC CGACATCATG TCGTTGGTAT CGCTCAAGTC GCCTGGCTCA
ATGGGCGCCG ATGTGGTCTT CGGTAGCGCT CAGCGTTTCG GCGTACCAAT GGGCTTTGGT
GGTCCACACG CCGCCTTCTT CGTGACTCGC GACCAACACA AGCGTTCACT GCCAGGCCGA
ATTATCGGTG TGTCTCAAGA TACCCGCGGC AACCGCGCAC TGCGTATGGC GATGCAGACT
CGTGAGCAGC ATATCCGCCG CGAAAAGGCT AACTCAAACA TCTGTACCGC ACAGGTGCTG
CTGGCCAACA TGGCCTCTTT CTACGCCGTA TTCCATGGCC CACAAGGCCT GAAGATCATC
GCCGATCGTA TCCACCGTCT GGCCGACATC TTTGCCGCTG GCTTGAAAGC GAAAGGCGTT
GAGCTGGTTA ATAATACTTG GTTCGATACC GTTTCCTTCA AGGTTGCCGA CAGCGCCGCC
GCGCAGGCTC GCGCCATTGC CGGTGAAGTT AACCTGCGTA TAGACAGCGA CGGCATTTTA
GGTGTCGCCA TGGCTGAGAC CACCACGCGT GAAGATGTGG CGCAGCTGTT TGATATCGTA
CTGGGCGAAG GTCATGGGCT GGATGTGGCG GCAATCGATG CCGACATCAT CGCTAATGGC
AGCAACTCAA TTCCAGCCGA GCTGGTACGC CAAGACGCTA TCCTTGAGCA TCCAACGTTC
AATCGCTACC ACAGCGAAAC TGAGATGATG CGTTACATCA AGCGTCTGGA AAACAAAGAT
TTAGCACTGA ACCACTCGAT GATCTCACTG GGTTCTTGCA CCATGAAGCT GAACGCTGCA
ACCGAGATGA TGCCTGTGAG CTGGCCAGAA TTTGGCAATA TGCATCCTTT CTGCCCGCAA
GATCAAGCCC AGGGGTATGC CGAGCTTATC GAAGAGCTAT CAAACTGGTT GGTCGACATC
ACAGGTTATG ACGCCATGTG CATGCAGCCT AACTCGGGCG CTTCGGGCGA ATACGCCGGT
CTGCTGGCTA TCAAGAAGTA CCACGAGTCT CGCGGTGAAG GCCACAGAAA CGTCTGTCTG
ATCCCTCAGT CTGCCCACGG TACTAACCCT GCATCTGCCC AGCTTGCTGG CATGAAGATC
GTAGTTACCG CCTGTGACAA ACAGGGTAAC GTGGACATGG AAGATCTTAA GGCTAAGGCT
GCCGAAGTGG CCGAAAACCT CTCTTGTATC ATGGTGACCT ACCCATCGAC TCACGGTGTG
TACGAAGAGA CCATCAGCGA GATCTGTGAA GTGATCCATC AGCACGGTGG CCAGGTATAC
CTGGACGGTG CCAACATGAA CGCTCAGGTA GGTCTGACTT CACCTGGTTC AATCGGCGCA
GACGTGTCGC ACCTTAACCT GCACAAGACC TTCGCCATTC CACACGGCGG CGGCGGACCA
GGTATGGGCC CAATCGGCGT TAAAGCACAC CTTGCGCCAT TCGTTGCCGG TCACGCCGTG
GTTAAGCATG GTCGTGAGTC AGACAACAAC GGTGCGGTAT CGGCAGCGCC ATACGGCAGC
GCCAGCATCC TGCCTATCAC CTGGATGTAC ATCAAGCTAC TGGGTTACCA GGGCCTGAGA
CAGTCTACTC AGATGGCACT GCTAAACGCT AACTATGTGA TGAAGAAGCT GTCTGCCCAT
TACCCTGTGC TCTACACAGG CCGTAATGAC CGCGTAGCGC ACGAGTGCAT CATCGACCTG
CGTCCGCTGA AAGAAGCCTC TGGCGTCACC GAGATGGATA TCGCTAAGCG TCTGAACGAC
TACGGTTTCC ACGCGCCGAC CATGAGCTTC CCGGTTGCCG GTACCCTGAT GATCGAGCCA
ACAGAATCTG AGTCTAAGGC TGAGCTGGAT CGCTTCATCG AAGCCATGGT CGCTATTCGC
GGCGAGATCG CTAAGGTTGA AGCCGGTGAG TGGCCAGCGG ACAACAATCC GCTGCACAAC
GCACCACACA CCATGGCCGA TATCATGGAC AGCGAGTTCG ACTCACGTCC ATACAGCCGT
GAAACGGCCG TGTTCCCAAC GGCTGCGGTT AAGGCTAACA AGTTCTGGCC GACTGTGAAT
CGTATCGATG ACGTGTACGG TGACCGTAAT CTAATGTGCT CATGTGCACC GATTGACGAT
TACAAATAA
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| Protein sequence | MTTETLTQLE QHELFIRRHI GPDSADQQEM LNFVGAESLE DLTQQIVPES IRLGRDLAVG
SACGEAEGLA SIRKYADKNK VFKSYIGMGY YGTIVPSVIQ RNVFENPGWY TAYTPYQPEI
AQGRLEAILN FQQLSMDLTG LDLASASLLD EATAAAEAMA LAKRVSKAKK ANIFFIADDV
FPQTIDVVKT RAECFGFEIV VGPASEAVNY ELFGALFQYT NHYGQITDFT ELFAALQEKK
AVVTVAADIM SLVSLKSPGS MGADVVFGSA QRFGVPMGFG GPHAAFFVTR DQHKRSLPGR
IIGVSQDTRG NRALRMAMQT REQHIRREKA NSNICTAQVL LANMASFYAV FHGPQGLKII
ADRIHRLADI FAAGLKAKGV ELVNNTWFDT VSFKVADSAA AQARAIAGEV NLRIDSDGIL
GVAMAETTTR EDVAQLFDIV LGEGHGLDVA AIDADIIANG SNSIPAELVR QDAILEHPTF
NRYHSETEMM RYIKRLENKD LALNHSMISL GSCTMKLNAA TEMMPVSWPE FGNMHPFCPQ
DQAQGYAELI EELSNWLVDI TGYDAMCMQP NSGASGEYAG LLAIKKYHES RGEGHRNVCL
IPQSAHGTNP ASAQLAGMKI VVTACDKQGN VDMEDLKAKA AEVAENLSCI MVTYPSTHGV
YEETISEICE VIHQHGGQVY LDGANMNAQV GLTSPGSIGA DVSHLNLHKT FAIPHGGGGP
GMGPIGVKAH LAPFVAGHAV VKHGRESDNN GAVSAAPYGS ASILPITWMY IKLLGYQGLR
QSTQMALLNA NYVMKKLSAH YPVLYTGRND RVAHECIIDL RPLKEASGVT EMDIAKRLND
YGFHAPTMSF PVAGTLMIEP TESESKAELD RFIEAMVAIR GEIAKVEAGE WPADNNPLHN
APHTMADIMD SEFDSRPYSR ETAVFPTAAV KANKFWPTVN RIDDVYGDRN LMCSCAPIDD
YK
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