Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2987 |
Symbol | |
ID | 4923788 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3546326 |
End bp | 3547225 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640164597 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001095112 |
Protein GI | 127513915 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.120469 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGAGC TTAGGCATTT ACGTACATTG GTCGCCCTGA AAGAGAGCGG CAGTCTCGCA GGCGCAGCCA AGAAGCGCTT TGTCACCCAG TCGGCCTTAT CCCACCAGAT CAAGGAACTG GAGACCCGCA TCAACTCGGC GATTTTCGTG CGTAAGAGTA AACCCCTCTC CTTTACCCAA GAGGGCGCTA GGTTGCTCAA TCTGGCCGAA GAGATCTTGC CTAAGGTGAT AGAAACCGAA ATCGATCTCA AGAATGGCCT GGGCAGCGAA GCGAGAGATC TCTTTGTGGG TATCGAATGC CACAGCTGTT TTCGTTGGCT GATGCCGGTG ATCGAGCAGT TTAATGCCAG CTTTCCCCAC ACCAACCTGG AGCTGTCGAG CCGCCACCTG TTCGATTCGC TGACCGCGCT CAAGCAGGGA CAGCTGGATG TGGTGCTCAC CTCAGACCCT ATACCCGATC ATGATATTGC CTATCAGCAC CTGTTCGATT TCGAGGTCAA ACTACTGGTC GCCGCGGATC ATCCGCTGGC CGAACTTCCC TATGTCACGG CGGCGCAGCT TAAGGATCAG ACCCTTCTCA CCTACCCAGT GCCACTAGAC AGGCTGGATA TCTATCGCCA CTTCATGGAG CCTGCGGGCG TGCCGGTTGC CAAGCAGATC CGCTGCGATC TCACCGCCAT GTTGCTGCAA CGCATCGCCT GCAAGGATGG GGTCGCCGCC CTGCCGAGTT GGTCGATCAA CGAGGCCCAC GGCCTGTCGC TCAAGGCGGT AAAACTGGGA TCAGAAGGGC TCAGACGCCC GCTGTTTGGC GCCTATCGCA GCAACGGCAG CAGTGCGCGC CTCGCCCAGC AGTGGCTCAA TCTGGTGACC TCTGAGGGGC TGGAGCGTCA GGGGCACTAA
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Protein sequence | MIELRHLRTL VALKESGSLA GAAKKRFVTQ SALSHQIKEL ETRINSAIFV RKSKPLSFTQ EGARLLNLAE EILPKVIETE IDLKNGLGSE ARDLFVGIEC HSCFRWLMPV IEQFNASFPH TNLELSSRHL FDSLTALKQG QLDVVLTSDP IPDHDIAYQH LFDFEVKLLV AADHPLAELP YVTAAQLKDQ TLLTYPVPLD RLDIYRHFME PAGVPVAKQI RCDLTAMLLQ RIACKDGVAA LPSWSINEAH GLSLKAVKLG SEGLRRPLFG AYRSNGSSAR LAQQWLNLVT SEGLERQGH
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