| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2962 |
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| Symbol | |
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| ID | 4924056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3513984 |
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| End bp | 3515672 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164572 |
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| Product | malate dehydrogenase |
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| Protein accession | YP_001095087 |
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| Protein GI | 127513890 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0281] Malic enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGATA ATAAACGCCC GCTATATCTT CCTTTTGCCG GCCCTGCCAT TCTTGAAGCC
CCCTTGATCA ACAAGGGAAG TGCCTTCACC GAAGAGGAGC GTATCTTCTT TAACCTAGAG
GGCCTGCTGC CTCATGTGAT CGAGACCATC GAAGAACAGG CATCGCGCGC CTACGATCAG
TACAAGAACT TCGGCAACGA TCTCGATCGT CATATCTATC TGCGTAACAT TCAGGATACC
AACGAGACCC TGTACTACCG TCTGCTGCAG AATCATATTA CCGAGATGAT GCCCATCATC
TACACGCCGA CGGTTGGCCT GGCTTGTGAG CGTTTCTCGA AAAACTATCG TCGTAACCGC
GGCCTGTTTA TCTCCTATCC CAACAAGGAT CGCATCGACG ACATCCTCAA TAACTCGACC
CGTCAGAAGG TGAAGATCAT CGTTGTGACC GATGGTGAGC GTATCTTGGG TCTGGGCGAC
CAGGGGATCG GCGGCATGGG TATTCCTATC GGTAAGCTGT CGCTCTACAC CAGCTGTGGC
GGTATCAGCC CGGCCTATAC CTTGCCTATC ACCTTAGACG TGGGTACAGA TAACCCGCAT
CTGCTGGAAG ATCCTATGTA TATGGGCTGG CGTAATCAGC GTATCGGCGG CGAAGAGTAT
GCCGAGTTTG TCGAGGCCTT CATGGAGGCG GTACATAGAC GTTGGCCGGA TGCTTTGATC
CAGTTTGAAG ACTTCGCTCA GAAGAACGCC ATGCCGCTGC TTGAGCGTTA CAAGGACAGA
TACTGCTGCT TTAACGACGA CATTCAGGGC ACCGCGGCGG TGACAGTTGG CTCCTTGCTG
GCGGCCTGTC AGGCGGCGGA CAGTAAGCTG AGTCAGCAGC GCATCGCCTT CTTAGGCGCC
GGCAGTGCAG GTTGTGGTAT TGCCGAGGCG ATCATCGCCC AGATGGTGTC AGAAGGCATT
AGCGACGAGC AGGCACGCCA GCAGGTATTC ATGGTAGACC GCTGGGGACT GCTGCAAGAC
AACATGCCTA ACCTGCTGCC TTTCCAACAG AATCTGGCGC AGCAGGTGGC CAAGGTCGAG
GGCTGGAACA CTGAGAGTGA GAACATCTCG CTATTGGATG TGATGCACAA TGGTAAGCCT
ACCGTGCTGA TCGGGGTATC TGGCGCGCCG GGTCTGTTCA GCGAAGAGAT CATCAAGGCG
ATGCACACTC ACTGTGAACG CCCGATCATC TTCCCGCTGT CTAACCCGAC TAGCCGCGTC
GAGGCGACGC CGAAAGATAT TCTGCACTGG ACCAAGGGTC AGGCGCTGGT GGCAACCGGC
AGCCCGTTCG AGCCTGTGGT GATCGAGGAG CAGACCTATG AGATCGCCCA GTGTAACAAC
AGCTATATCT TCCCTGGGAT TGGTCTGGGC GTGCTGGCCT CTGGTGCTAA GCGCGTCAGC
AACGAGATGC TGATGGCCTC AAGCCGCGCC CTGGCTGAGT GCTCGCCCTT GGCGAAGGAC
GGAGAGGGAT CTTTGCTGCC GGCACTGGAA GATATTCACT CGGTCAGTAA GCATATCGCC
TTCGCGGTGG GCAAGGTTGC CATCGAGCAG GGACATGCGC TGCCAGCCAG CGACGAGCTA
CTGATGCAGG CGATCGAAGA TAACTTCTGG ACGGCGGAAT ATCGCCGTTA TAAGCGCACC
TCTTTCTAA
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| Protein sequence | MDDNKRPLYL PFAGPAILEA PLINKGSAFT EEERIFFNLE GLLPHVIETI EEQASRAYDQ
YKNFGNDLDR HIYLRNIQDT NETLYYRLLQ NHITEMMPII YTPTVGLACE RFSKNYRRNR
GLFISYPNKD RIDDILNNST RQKVKIIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG
GISPAYTLPI TLDVGTDNPH LLEDPMYMGW RNQRIGGEEY AEFVEAFMEA VHRRWPDALI
QFEDFAQKNA MPLLERYKDR YCCFNDDIQG TAAVTVGSLL AACQAADSKL SQQRIAFLGA
GSAGCGIAEA IIAQMVSEGI SDEQARQQVF MVDRWGLLQD NMPNLLPFQQ NLAQQVAKVE
GWNTESENIS LLDVMHNGKP TVLIGVSGAP GLFSEEIIKA MHTHCERPII FPLSNPTSRV
EATPKDILHW TKGQALVATG SPFEPVVIEE QTYEIAQCNN SYIFPGIGLG VLASGAKRVS
NEMLMASSRA LAECSPLAKD GEGSLLPALE DIHSVSKHIA FAVGKVAIEQ GHALPASDEL
LMQAIEDNFW TAEYRRYKRT SF
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