| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2921 |
|---|
| Symbol | |
|---|
| ID | 4921181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3459650 |
|---|
| End bp | 3460843 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164526 |
|---|
| Product | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
|---|
| Protein accession | YP_001095046 |
|---|
| Protein GI | 127513849 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000284192 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0970555 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCAGA ACCAGCGCAA GACCTTAGTG AAAGATGTTG TCGTGTTAGG CGGCGGTATG
GTGGGGGCGG CGACGGCCCT CGGGTTGGCG CAGCTTGGCC TGTCGGTGGC GGTGGTTGAG
GCCTATGGGC CCAAGGCCTA CGACAGTGAG CAGGAACTGG ATCTTAGGGT ATCGGCCATC
AGCGTGGCCT CTGAGCAGTT GCTCGAGCGC CTCGGCGCCC TGTCGGCACT CGGCGAGATG
CGTCAGGTGG CCTACAAGGG GCTGGAGACC TGGGAGATGG AAGGCTGCAT CACCCAGTTT
CATAGCGACC AGATTGGCGC CTCTCATCTT GGTCATATCG TCGAGAACCG TCTGGTGCAG
CTGGCCCTGT GGCAGCAATT TGACCGACAT GACAATCTCA GCCTGCTTTG CCCAGCCAAG
GTCAGCCAGT TTGCCCGCAT GGAAGACGGC ATTCGTCTCA CGCTGGAGGA TGGCAGCGAG
ATAGAGACGC GGCTATTGGT GGGGGCCGAT GGCGCCAACT CTCAAGTGCG CCAGTGGGCA
GGGATCGGCG TGACGGGTTG GGATTACGCC CAGTCGGCCA TGCTGATCAA TATCGCCACC
GAGCAGGAAG AGCAGGATGT CACCTGGCAG CAGTTTACCC CTAAGGGGCC GCGCTCCCTG
TTGCCGCTAC CGGGTAAGCA CGCCTCCCTG GTGTGGTACG ACGATGCCAG TCGTATCGCG
CAGCTGCAAA GCCTAAGTAA TCAGGCGCTG TATGAGCAGA TAGATGCCCA TTTTCCTAAA
CGTCTGGAGC GTGAGTTTAA GGTACTCTCT AAGGGAAGTT TCAAGCTGAC CCGTCGCCAC
GCCCAGCGCT ACTTCGACGA TCACCTGGTG ATTCTGGGCG ACGCCGCCCA TACCATCAAC
CCCCTGGCCG GCCAGGGTGT CAACCTGGGC TTTAAGGATG TCAGCGCCCT GATAGACACC
TTCGCTGATG CCATCGCTAA CCATAAATGC TGGTGGGATA ACGAGGTGCT CAAGAGTTAT
CAGGCTAAGC GTTACACCGA CAATCAGCTG ATGATGACCA CCATGGATCT CTTCTACGCC
GGCTTTAGCA ACGAGCTCTT GCCGCTGAAA CTGCTGCGAA ACGGCGCCCT CAAGCTGGCG
AACATAGACG GGCCCATCAA GCAGAAGGTA CTCAAATACG CCATGGGGCT ATAA
|
|---|
| Protein sequence | MSQNQRKTLV KDVVVLGGGM VGAATALGLA QLGLSVAVVE AYGPKAYDSE QELDLRVSAI
SVASEQLLER LGALSALGEM RQVAYKGLET WEMEGCITQF HSDQIGASHL GHIVENRLVQ
LALWQQFDRH DNLSLLCPAK VSQFARMEDG IRLTLEDGSE IETRLLVGAD GANSQVRQWA
GIGVTGWDYA QSAMLINIAT EQEEQDVTWQ QFTPKGPRSL LPLPGKHASL VWYDDASRIA
QLQSLSNQAL YEQIDAHFPK RLEREFKVLS KGSFKLTRRH AQRYFDDHLV ILGDAAHTIN
PLAGQGVNLG FKDVSALIDT FADAIANHKC WWDNEVLKSY QAKRYTDNQL MMTTMDLFYA
GFSNELLPLK LLRNGALKLA NIDGPIKQKV LKYAMGL
|
|---|
| |