| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2881 |
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| Symbol | |
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| ID | 4921853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3420356 |
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| End bp | 3421690 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164478 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit A |
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| Protein accession | YP_001095006 |
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| Protein GI | 127513809 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1726] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA |
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| TIGRFAM ID | [TIGR01936] NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0069433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTACAA TAAAGAAAGG ATTGGACCTG CCTATAACAG GCGGACCAGA GCAAGTTATC
CATAATGGCC CAGCCATTAA ACACGTAGCT ACTTTGGGTG AAGAGTATAT TGGCCTGCGC
CCCACGATGA AGATCAAAGT GGGTGATAAA GTGCAGAAAG GTCAGGTGAT TTTTGAAGAC
AAAAAGAATC CTGGCGTTAA ATATACTGCT TTAGCCAGTG GCACCATCTC AGAAATTAAC
CGGGGCGCCC AGCGTGTTCT TCAGTCTGTC GTCATCGAAG TAGAGGGAGA CGACAGCGTT
TCTTTCGCTA AATACGATGC CGCAGCGTTA GACACCCTAG AGCCGCAACT CGTACGCGAC
AACCTGATCG AATCAGGTAT GTGGCCTGCA TTGCGCACGC GTCCTTTCAG CAAAGCACCC
GCAGTTGACT CAACGCCTGC CGGTATTTTT GTGACCGCTA TCGATACCCA ACCGCTTGCT
GCCGATCCTG CCGTTATCAT TAACGAGCAC AAGGAAGACT TTGCCAATGG CTTAAGAGTC
CTTGCACGAT TGACTGAAGG TAAGGTGTAT CTGTGTAAGG CGCCAGGAGC CGATATTCCT
GCGGCCAACG CACAAGTCGA AGAGTTTGCC GGTCCGCACC CTGCGGGTCT TGCTGGTACT
CATATCCATT TTGTTCTGCC TGCATCGGCT AAACGCACCG TTTGGCATGT TGGCTATCAA
GATGTGATCG CAATCGGTCA ACTATTTACT ACTGGTGAGC TAAACACTCA GCGCGTGGTA
GCGATTGCGG GTCCTAAGGC GCTTAAGCCT AGACTCGTAC GCACTCACAG TGGCGCCTCT
ATTGCTGAGC TAACTGCCGG TGAAACAGCC CAAGGCGATG TACGCGTTAT CGCAGGTTCT
GTGCTTTCTG GTAAGACGGC AACTGGCCCA CACGCCTACT TGGGACGTTT CTTTAACCAG
GTTTCTCTGC TTGAAGAAGG CCGCGAACAA GAATTTATCG GCTGGGCTAT GCCTGGTGCC
AACAAGTTCT CTATCACGCG CGCTTTCCTG GGTCACCTGT CACCGTCTCG TCTGTTTAAC
ATGACGACCA GCACAGGGGG CTCTGACCGT GCCATGGTGC CTATCGGCAA CTATGAGCGT
GTTATGCCTC TCGACATTCT TCCTACCATG CTATTGCGTG ACCTGGTGTC AGGCGATACC
GACGGCGCAG CTGCCTTAGG CGCGTTAGAG TTAGACGAAG AAGATTTGGC ACTATGTACT
TTCGTATGTC CTGGTAAGTA TGACTACGCG TCGTACCTAC GCGACTGCCT AGATACGATT
GTGAGGGAAG GCTAA
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| Protein sequence | MITIKKGLDL PITGGPEQVI HNGPAIKHVA TLGEEYIGLR PTMKIKVGDK VQKGQVIFED
KKNPGVKYTA LASGTISEIN RGAQRVLQSV VIEVEGDDSV SFAKYDAAAL DTLEPQLVRD
NLIESGMWPA LRTRPFSKAP AVDSTPAGIF VTAIDTQPLA ADPAVIINEH KEDFANGLRV
LARLTEGKVY LCKAPGADIP AANAQVEEFA GPHPAGLAGT HIHFVLPASA KRTVWHVGYQ
DVIAIGQLFT TGELNTQRVV AIAGPKALKP RLVRTHSGAS IAELTAGETA QGDVRVIAGS
VLSGKTATGP HAYLGRFFNQ VSLLEEGREQ EFIGWAMPGA NKFSITRAFL GHLSPSRLFN
MTTSTGGSDR AMVPIGNYER VMPLDILPTM LLRDLVSGDT DGAAALGALE LDEEDLALCT
FVCPGKYDYA SYLRDCLDTI VREG
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