| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2878 |
|---|
| Symbol | |
|---|
| ID | 4921850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3417738 |
|---|
| End bp | 3418370 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640164475 |
|---|
| Product | Na(+)-translocating NADH-quinone reductase subunit D |
|---|
| Protein accession | YP_001095003 |
|---|
| Protein GI | 127513806 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
|---|
| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.408197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG CAAAAGAACT TAAACAGGTT CTGACTGGAC CTATCATTAG TAACAACCCG
ATTGCGTTGC AGATCCTGGG GGTATGTAGT GCCCTGGCGG TAACCAGTAA GATGGAAACT
GCCTTGGTAA TGACCATAGC TCTGACTGCC GTAACGGCCT TGTCTAACTT GTTCATCTCT
ATGATACGTA ACCACATTCC AAGCAGTGTG CGTATTATCG TTCAGATGAC CATTATCGCT
TCACTGGTGA TCGTGGTTGA CCAGGTACTG CAAGCTTATG CCTATGACGT GGCTAAGCAG
CTGTCGGTAT TCGTGGGTCT GATTATCACC AACTGTATCG TAATGGGCCG CGCCGAAGCT
TACGCGATGA AGACGCCGCC TATGATGAGC TTCATGGATG GTATCGGTAA CGGTCTGGGT
TATGGTGCCA TCTTGTTGTC AGTTGGCTTC GTGCGTGAAT TGTTTGGTAA CGGTTCGCTA
TTTGGTGTCG AGATCCTAAG CAAGATCTCT GAGGGCGGCT GGTATCAGCC AAACGGTCTG
CTTCTGCTGC CACCAAGTGC GTTCTTCCTG ATTGCATCGT TGATCTGGAT TATCCGTACC
ATCAAGCCAG AGCAAGTTGA AGCAAAAGGA TAA
|
|---|
| Protein sequence | MADAKELKQV LTGPIISNNP IALQILGVCS ALAVTSKMET ALVMTIALTA VTALSNLFIS
MIRNHIPSSV RIIVQMTIIA SLVIVVDQVL QAYAYDVAKQ LSVFVGLIIT NCIVMGRAEA
YAMKTPPMMS FMDGIGNGLG YGAILLSVGF VRELFGNGSL FGVEILSKIS EGGWYQPNGL
LLLPPSAFFL IASLIWIIRT IKPEQVEAKG
|
|---|
| |