Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2868 |
Symbol | |
ID | 4922247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3404415 |
End bp | 3406223 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640164465 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001094993 |
Protein GI | 127513796 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGTAC AACTACTCAA TGCCCGCGAC ATGGATTTTC TGCTGTATGA ATTCCTGGAC ACAGAAGGAC TACTGCAGCG CCCCCGTTAT TGCGAGCACA GCCGCGAGGT GTTTGACGCC ACCCTGGAGA CGGCGAAAAC CATCGCCGAG AAATACTTTG CCAATCACAA CCACAAGGGG GACGAGCAGG AGCCGACCTT CGACGGTGAA AGGGTGCAGA TGATCCCGGA AACCAAGGAG GCCTGGGACC ATTTTGCCGA TGCTGGCTTT CTGGCTGCCC ACTATGACTT CGAAGATGGC GGCATGCAGT TGCCAGAGAT CATACTGCGC GCCGCGATGG CCTATTTCAG CGCCGCCAAT ACCGCCACCG CCGGCTATCC TTGCCTGAGT CTGGGAGCGG CTAACCTGAT TCAGAGCTTT GGCAGCGACG AGCAGAAGGC TAAATTTATT CCCCCCATGC AGGAGGGCCG CTTCGCTGGC ACCATGGCGA TGACAGAGCC GGGCCAGGGC TCGGCGCTGG CCGACATCAC CACCAAGGCG GTGCCACAGG CCGACGGCAG CTATCTGATC ACGGGCCAGA AGATGTTTAT CTCAGGCGGT GATCAGAGCA TCACAGAGAA CATTATCCAC ATGACCCTGG CGAAGATCGA GGGCGCCCCG GCCGGCGTCA AGGGGATCTC CCTGTTTATC GTGCCCAAGT TCCTGGTCAA TGACGATGGC TCCCAGGGGG AGCGTAACGA CGTGGCCCTG GCCGGTCTGC TGCACAAGAT GGGCTTTCGT AACACCACCT CTACCGTCTT GTCATTTGGC GAGAAGGGCG GCGCCGTGGG TTACCTGGTC GGCGAGCCCC ACAAGGGCCT GGCCTACATG TTCCAGATGA TGAATGAGGC GCGCATCTTC GTCGGCAGCA CGGCGGCGGT GCTGGGCTAC CAGGGCTTTA ATGCCTCCCT GGAATACGCC CGTGAGCGTC CTCAGGGACG TCTGCCATCG AACAAAGACC CTGAGTCCAA GCAGATCCCT ATCGTGCAAC ACGCCGATGT GCGCCGCATG TTGCTGGCGC AGAAGGCCTA TGTGGAAGGC TCGCTGGCGC TGTGTCTGTA TGCCAGCTCG CTGTTTGAAG ATAGCCACAC GGCGGATACG CCAGAGGCCC GTCAGCAGGC CTTCATGCTG CTTGATCTGC TGACGCCCAT AGTCAAATCC TGGCCCTCAA AGTACGCCCT CAAGGCCAAC GATTTGGCCA TACAGGTACT CGGTGGCTCG GGTTATATCC GCGAGTATCC GGTGGAGCAG TATTATCGCG ACAACCGCCT CAATCCAATC CATGAGGGCA CGGAGGCGAT CCACGGCCTG GATATCCTGG GGCGCAAGGT GCCTATGGGG AACATGGCCG CCTATGAGCT GTTTGTGAAG GCGGTGGAAG CCACTGCCGC CGAGGCCGCT GCGAGGGAAA CGACTTCCGA GATGGGCCAA TCCCTGCTCG CCGCGCTTGG CAAGCTGAGC AGGCTCAATG CCGTACTGCT GCCCATGCTG GCCAAAGATC CGGATTTGGG CCTGGCCAAC GCCACCCTGT ATCTGGACGT GTTTGGCCGC ATCACCGCCA GCTGGATCTG GCTACAGCAG GCCAATATCG CCGCGGCCAA GCTGGCCGAA GAGGGGGCTC TGTCTGTCGA TGATGCCAAC TTCTATCAGG GTAAGCTGCA GGCGGCGCGT TACTACCTGG AGTGGGAACT GCCGGAGATC GATCCGCAGA TCGCCCTGCT GGAGAGCCAT AACAGTGTGC CCTTCGATAT GCAGGACGCC TGGTTCTAG
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Protein sequence | MTVQLLNARD MDFLLYEFLD TEGLLQRPRY CEHSREVFDA TLETAKTIAE KYFANHNHKG DEQEPTFDGE RVQMIPETKE AWDHFADAGF LAAHYDFEDG GMQLPEIILR AAMAYFSAAN TATAGYPCLS LGAANLIQSF GSDEQKAKFI PPMQEGRFAG TMAMTEPGQG SALADITTKA VPQADGSYLI TGQKMFISGG DQSITENIIH MTLAKIEGAP AGVKGISLFI VPKFLVNDDG SQGERNDVAL AGLLHKMGFR NTTSTVLSFG EKGGAVGYLV GEPHKGLAYM FQMMNEARIF VGSTAAVLGY QGFNASLEYA RERPQGRLPS NKDPESKQIP IVQHADVRRM LLAQKAYVEG SLALCLYASS LFEDSHTADT PEARQQAFML LDLLTPIVKS WPSKYALKAN DLAIQVLGGS GYIREYPVEQ YYRDNRLNPI HEGTEAIHGL DILGRKVPMG NMAAYELFVK AVEATAAEAA ARETTSEMGQ SLLAALGKLS RLNAVLLPML AKDPDLGLAN ATLYLDVFGR ITASWIWLQQ ANIAAAKLAE EGALSVDDAN FYQGKLQAAR YYLEWELPEI DPQIALLESH NSVPFDMQDA WF
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