Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2820 |
Symbol | prfC |
ID | 4922490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3341022 |
End bp | 3342602 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640164415 |
Product | peptide chain release factor 3 |
Protein accession | YP_001094945 |
Protein GI | 127513748 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG4108] Peptide chain release factor RF-3 |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0200081 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000558993 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCAGGCT ATACAGTTGA AGTCGACAAG CGTCGTACTT TCGCCATCAT CTCGCACCCG GATGCGGGTA AAACCACCAT CACCGAGAAG GTCTTGTTGT TCGGACAGGC GTTGCAGAAG GCGGGCACGG TAAAGGGTAA GAAGTCGGGA CAGCATGCCA AGTCTGACTG GATGGAGATG GAAAAGGATC GTGGTATCTC GATTACCACC TCTGTAATGC AATTCCCTTA CCGCGAGGCC TTGGTGAACC TGCTGGATAC TCCAGGTCAC GAAGACTTCT CGGAAGATAC CTATCGTACG CTGACCGCAG TTGATTCTTG CCTCATGGTG ATCGACTCGG CAAAGGGTGT TGAGCAACGC ACCATCAAGT TGATGGAAGT CACCCGTCTG CGTGATACGC CGATTGTGAC CTTCATGAAC AAACTTGACC GCGATATTCG TGATCCTATC GAGTTGATGG ACGAGGTGGA AAACATACTG AACATCGCCT GTGCGCCAAT TACCTGGCCT ATCGGCGCCG GTAAAGAGTT CAAAGGCGTG TACCACCTGC TGCGTGATGA GGTGATCCTC TATCAGAACG GCATGGGTCA TACCATCCAG GACTCTCGCG TCATCAAGGG CTTGGATAAT CCTGAGCTGG ATGAGGCGAT CGGCAGCTAT GCACAAGACC TGCGCGATGA GATGGAGCTG GTGCTGGGTG CTTCTCATGA ATTTGACCTT GAGGCCTTCC TCAAGGGCGA GCTAACGCCG GTATTCTTCG GTACCGCGCT GGGTAACTTC GGTGTCGACC ATATTCTCGA TGGTATCGTC GAGTGGGCGC CGCGTCCTCA GCCGCGCGAG TCGGATCAGC GTAACGTCGA GCCCGACGAG TCTAAGTTCA GTGGCTTCGT GTTTAAGATC CAGGCAAACA TGGATCCCAA GCATAGGGAC CGCGTCGCCT TTATGCGTGT ATGTTCAGGC CGCTATGAGC AAGGCATGAA GATGCATCAC GTGCGTATCG GTAAAGATGT GAACGTCAGC GATGCGCTTA CCTTTATGGC GGGCGATCGT AACCGCGCCG AGGCAGCCTA TCCTGGTGAC ATCATAGGTC TGCATAACCA TGGCACCATT CGCATCGGCG ATACCTTCAC CCAAGGCGAG AAGCTTCGTT TTACCGGTGT GCCTAACTTC GCACCTGAGA TGTTCCGTCG TATCAGGCTG AAAGATCCGC TCAAGCAGAA GCAACTGCTC AAGGGACTGG TTCAGCTTTC GGAAGAAGGT GCGGTGCAGG TGTTCCGTCC GCTTGATTCT AACGACCTGA TTGTAGGCGC CGTGGGTGTG CTGCAGTTTG AAGTGGTTGT GCAGCGTCTT AAGAGCGAAT ACAAGGTTGA GGCTATCTAC GAGGCGATCA GCGTGGCGAC GGCGCGCTGG GTCTACAGCA AAGATGCCAA GAAGCTGGAG GAGTTTAAGC GCAAGTGCAG CAACAACCTG GCACTCGATG GTGGCGATAA CCTTACCTAT GTTGCGCCGA CCATGGTGAA CCTGAATCTG TCGATGGAGC GTTATCCCGA CATCGAGTTC GCCAAGACCC GAGAAAACTA A
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Protein sequence | MSGYTVEVDK RRTFAIISHP DAGKTTITEK VLLFGQALQK AGTVKGKKSG QHAKSDWMEM EKDRGISITT SVMQFPYREA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEQR TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI ELMDEVENIL NIACAPITWP IGAGKEFKGV YHLLRDEVIL YQNGMGHTIQ DSRVIKGLDN PELDEAIGSY AQDLRDEMEL VLGASHEFDL EAFLKGELTP VFFGTALGNF GVDHILDGIV EWAPRPQPRE SDQRNVEPDE SKFSGFVFKI QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR NRAEAAYPGD IIGLHNHGTI RIGDTFTQGE KLRFTGVPNF APEMFRRIRL KDPLKQKQLL KGLVQLSEEG AVQVFRPLDS NDLIVGAVGV LQFEVVVQRL KSEYKVEAIY EAISVATARW VYSKDAKKLE EFKRKCSNNL ALDGGDNLTY VAPTMVNLNL SMERYPDIEF AKTREN
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