Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2775 |
Symbol | |
ID | 4922739 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3280656 |
End bp | 3282026 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164370 |
Product | MATE efflux family protein |
Protein accession | YP_001094900 |
Protein GI | 127513703 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAGC ATCATGCCGT GCACCAGAGT GATGAGCACT CAGATTTAGC CACAGCCCCC ATCCCTAAGC TGGTGTGGCG CTATGCCATT CCTACCATTC TCTCCATGGT GGTGACCGGC GTCTATGTGG CCATCGACGG TATGTTTGTC GGCCATTATC TTGGCGAGGT GGGCTTGGCG GGCATGATGC TGGCCTATCC CGTCGGTGCG ATACTCTACG CGGTAGGTGC ATTAATTGGC ATGGGCGCCG CATCATTGGT GTCGATAAAC CTGGGGCTAA AAGATGTCGC TAGGGCGCGG CACTTGCTGG GTAACGCCTT CACCCTCTGT CTGCTGGCGG GCACCGGACT GGCCCTGCTG GGTACCCGTT GGAGCCAGAC CATACTCATC TGGCTCGGGG CCGAAGGGGA GGTGCTGACC AGCGCCGAGC AGTATCTGTT TTGGTATTTT GCCCTCGGGG TCTTTCCCGT ATTGGCCATC GCCTTTACCG CCTTGCTGCG TAACGATGGC CGTCCCGGCT TCGTCACCCT GGTGCTTATC CTCTCAGGCT GTTTGAACGT GTTATTGGAT TGGCTGCTGA TCGTCGTGTT TCCCTATGGC CTGGCGGGCG CCGCCATCGC CACCATGATC TGTCAGGCCT TCACTGCGCT CGCCTGCCTG CAGCATTTCT TCACCAAGCG CACGCGATTG GGGATAAACT GGCAGCAGAT GCGTCTGAAT CTGGACCATT GCAGCAACAT CCTCAGGGTC GGCGTGCCAA GCTTCTTGAT GAACCTCTAC CTCTCCATCG TCCTGACCCT GCATAACATG GCGTTTCTCT GGGTTGGCGG CCCCATTCAT GTGGCGGCCT ATGGGGTGGT GAGCTACGCC GAGGCGCTGT TTTACCTGAT CTTCGAGGGG ATAGCTTTTG GTACTCAGCC TCTGTTTAGC TTCAACACCG GGGCGAAGCG TTTCGACAGG GTGTTCGAGA CCCTGAGGCT GGTCATTATC ATGACTCTGG TGACCGCGCT GGCGGGCGTC GTCTTTATCT ACTGGGCGCC AGAATATCTG GTTTATATCT TTGCCGGGGA TAATTCTGAG CTGGCGCCCG TGGCAATAGA GGGGATGCGC CTCTACTTCT GGGGACTGCC GTTCGAGGGG CTTATTCTGG TGGGCGCAGC CTTCTTCCAG GCGATCAACC GTCCTAAGGA GGCCTCGATA TTGACAGGTA GCAAGCTGGT GTTGATCGCC ATGGTGCTCT ATCTGTTCGC CTGGCTGTTT GGGGTCACAG GTGTCTGGAT CTCCCTGGCG AGCTGCTCCT TATTGCTGAC CATCTGGATG GTTTACACTT TAACTAAGCT TTCCAAGAAG TTAACTAACC CAATGTTTTA A
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Protein sequence | MTEHHAVHQS DEHSDLATAP IPKLVWRYAI PTILSMVVTG VYVAIDGMFV GHYLGEVGLA GMMLAYPVGA ILYAVGALIG MGAASLVSIN LGLKDVARAR HLLGNAFTLC LLAGTGLALL GTRWSQTILI WLGAEGEVLT SAEQYLFWYF ALGVFPVLAI AFTALLRNDG RPGFVTLVLI LSGCLNVLLD WLLIVVFPYG LAGAAIATMI CQAFTALACL QHFFTKRTRL GINWQQMRLN LDHCSNILRV GVPSFLMNLY LSIVLTLHNM AFLWVGGPIH VAAYGVVSYA EALFYLIFEG IAFGTQPLFS FNTGAKRFDR VFETLRLVII MTLVTALAGV VFIYWAPEYL VYIFAGDNSE LAPVAIEGMR LYFWGLPFEG LILVGAAFFQ AINRPKEASI LTGSKLVLIA MVLYLFAWLF GVTGVWISLA SCSLLLTIWM VYTLTKLSKK LTNPMF
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