| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2749 |
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| Symbol | |
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| ID | 4922916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3250045 |
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| End bp | 3250770 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640164344 |
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| Product | two component transcriptional regulator |
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| Protein accession | YP_001094874 |
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| Protein GI | 127513677 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR02154] phosphate regulon transcriptional regulatory protein PhoB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000593879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000330773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAACACGT GGGAATTCAC AGATAGAAGA TCGCATATGA CTGCTAGGAT TTTGATAGTT
GAAGATGAGC TGGCCATCCG AGAGATGTTA GCTTTTGTTT TAGAACAACA TGGATTTACG
ACAACTACAG CAGAGGATTT CGACTCAGCA TTGGATATGT TGTCAGAACC TTATCCAGAT
TTGGTGTTGC TCGATTGGAT GTTCCCGGGC GGCAGTGGTA TCCAGCTGGC CAAGAAACTG
CGCCAGGATG AGTTTACCCG TCACATTCCC GTCATCATGC TGACGGCCCG TGGCGAAGAG
GAAGACAAGG TGAAGGGGCT CGAAGTGGGC GCCGATGACT ATATTACCAA GCCTTTCTCG
CCCAAAGAGC TGGTGGCACG CATCAAGGCG GTAATGCGCC GCGCGGCACC AACGGCACTG
GAAGAGCCGA TAGACGTACA AGGATTGGTA CTCGACCCTG TGAGCCACCG CGTGACAGTG
GGCGATCAGG TACTGGAGAT GGGCCCGACC GAGTTCAGGT TGCTCCATTT CTTCATGACC
CATCCAGAGC GCGTCTACAG CCGTGAGCAG CTGTTGGACA ATGTCTGGGG CACCAATGTG
TATGTCGAAG ACAGAACCGT CGATGTGCAT ATTCGTCGCC TGCGTAAGGC CGTCGAGCCA
TCGAATCACG ACCGTTTGAT ACAAACCGTT CGTGGTGCCG GCTACCGTTT CTCGACCCGT
CTCTAG
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| Protein sequence | MNTWEFTDRR SHMTARILIV EDELAIREML AFVLEQHGFT TTTAEDFDSA LDMLSEPYPD
LVLLDWMFPG GSGIQLAKKL RQDEFTRHIP VIMLTARGEE EDKVKGLEVG ADDYITKPFS
PKELVARIKA VMRRAAPTAL EEPIDVQGLV LDPVSHRVTV GDQVLEMGPT EFRLLHFFMT
HPERVYSREQ LLDNVWGTNV YVEDRTVDVH IRRLRKAVEP SNHDRLIQTV RGAGYRFSTR
L
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