Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2681 |
Symbol | |
ID | 4923134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3173838 |
End bp | 3175154 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640164276 |
Product | general substrate transporter |
Protein accession | YP_001094806 |
Protein GI | 127513609 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.31051 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAA AGAAGAGTTT CGATGATTTG GAGTTTACTC CGCTTCATAA AAAAATAATG TTATGGGGAA GTGGGGGTCC TTTCCTCGAT GGTTATGTGT TAGTGATCAT AGGGTTAGCC CTACAACAAC TCACACCTGC CCTAGAGCTA GATGCCCAAT GGATAGGACT AGTCGGAGCC GCAACTCTGG TCGGCCTGTT TATCGGTACG GCGCTATTTG GTTATGTCGC CGATCTTTTT GGGCGCAAAC TGATGTTCAT GATAGATATC ATTGCCATCG CCGTCCTCTC CTTCGCCACC ATGTTCATCT CCTCCCCCAT AGAACTGGTG ATATTGCGTT TCTTGATTGG CATAGTCATA GGCGCCGACT ACCCTATCGC CACCTCTATG GTCGCCGAAT TTTCCCCAAC GAAACAACGC GCCTTTACCA TGGGCTTCAT CGCAGCCATG TGGTACGTGG GCGCGACCGC CGCCAATATG GTGGGCTATC TGCTATACGA TGTCACCGAT GGATGGCGCT GGATGTTTGG CAGCGCTATC ATCCCCTGCC TGGTTATCTT GCTCGGACGC TTCCATCTGC CGGAATCTCC CAGGTGGCTG CTGAAGAAAG GCCGTATCGA AGAGTGCAAA CAGGTGATGC ACCAATTTTT CGGCAAAGAT ATCAGCCTGA ATTTTGAGAC TGCAGAGCAG ACTAAATACA GCAAGTTATT CGAGGCCGTT TATTTAAAAC GTATCCTGTT TGTCGGCATT ATCTGGACCT GCCAGGTGAT CCCTATGTTC GCCATATATA CCTTTGGCCC GGAGATCATC GAACTCTTGG GCTTCACCGA CGGTAAAGAT GCCGCCCTGG GTAATATTGT CATCAGCATC TTCTTCATGG CGGGCTGTAT TCCGGCCATG TACTGGCTTA ACTCCATAGG TCGTCGCCCC CTGCTCATCG GCAGCTTCGC CATCATGACA GCCGCCCTGG CGGTGCTGGG AATAGTGGAT ACCCCGAGTA TCTGTCTGAT TGTTGCCGCA TTTGCCATCT ACGCCTTCTT CTCCGGAGGC CCGGGGATCT TGCAATGGCT ATATCCTAAC GAACTGTTTC CGACAGAGAT ACGCGCCTCG GCGGTTGGTG CCGTGATGTC TTTCAGCCGT ATAGGCACTA TCGTCTCCAC CTATGGCTTA CCACTGTTTA TGGCGACCTA TGGCATCTCG GCTACCCTGC TAGTTGGCGC GGCGATCTCC CTGCTTGGGC TACTGGTTTC CATCTTTATG GCGCCGGAAA CCAAGGGGCT GACACTGGAG ACCACCAGCT CGGTGGACTT TGAGTAG
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Protein sequence | MKSKKSFDDL EFTPLHKKIM LWGSGGPFLD GYVLVIIGLA LQQLTPALEL DAQWIGLVGA ATLVGLFIGT ALFGYVADLF GRKLMFMIDI IAIAVLSFAT MFISSPIELV ILRFLIGIVI GADYPIATSM VAEFSPTKQR AFTMGFIAAM WYVGATAANM VGYLLYDVTD GWRWMFGSAI IPCLVILLGR FHLPESPRWL LKKGRIEECK QVMHQFFGKD ISLNFETAEQ TKYSKLFEAV YLKRILFVGI IWTCQVIPMF AIYTFGPEII ELLGFTDGKD AALGNIVISI FFMAGCIPAM YWLNSIGRRP LLIGSFAIMT AALAVLGIVD TPSICLIVAA FAIYAFFSGG PGILQWLYPN ELFPTEIRAS AVGAVMSFSR IGTIVSTYGL PLFMATYGIS ATLLVGAAIS LLGLLVSIFM APETKGLTLE TTSSVDFE
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