Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2672 |
Symbol | |
ID | 4923125 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3162660 |
End bp | 3163445 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640164267 |
Product | carnitinyl-CoA dehydratase |
Protein accession | YP_001094797 |
Protein GI | 127513600 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.539378 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAT CATTACACGT GACCCGTAAT GGCAGCATCT TAGAGATCGT TTTAGACCGA CCTAAGGCCA ATGCCATCGA TGCAAAAACC AGTTACGAGA TGGGAGAAGT CTTCTTGGCA TTTCGTGACG ATCCCGAGCT AAGGGTCGCC ATCATTACCG GTGCCGGTGC GCGTTTCTTC TCTGCGGGTT GGGATCTCAA GGCGGCGGCA GAGGGAGAGG CACCAGATGC AGACTTCGGC CCGGGCGGCT TTGCCGGTTT GACCGAACTG TTCGATCTCG ACAAGCCGGT GATCGCCGCG GTCAATGGCT ATGCCTTCGG TGGCGGTTTC GAGCTTGCTC TGGCGGCTGA TCTGATTGTG TGCGCCGACA ACGCTAGCTT CGCGCTGCCA GAGGCCAAGT TAGGCATAGT GCCAGACAGC GGCGGTATGC TGCGCCTGCC TAAGTTGCTG CCAGCCCCTA TCGTTAACGA GTTGATGATG ACGGGCCGCA GCATGGACGC CCAGGAGGCA TTGCGCTGGG GTGTGGTCAA CCGTGTGGTT GAGCAAGAAG CACTGATGGA GACGGCTCGT GAGTTGGCAA ACGAGATCAG CCAGAGCGCA CCACTTGCCC TGGCGGCCAT CAAGGAGATC TATCGCGAGA CCGGCGAGCT GTCTGTCGAG CAAGGCTATG CCCATATCCG TGGCGGACAG CTGAAGCACT ATCCAAGCGT GCTGCACTCT GAAGATGCGC TGGAAGGTCC GGCGGCCTTT GCCGAGAAAC GCGATCCTGT GTGGCAAGGC AAGTAA
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Protein sequence | MSESLHVTRN GSILEIVLDR PKANAIDAKT SYEMGEVFLA FRDDPELRVA IITGAGARFF SAGWDLKAAA EGEAPDADFG PGGFAGLTEL FDLDKPVIAA VNGYAFGGGF ELALAADLIV CADNASFALP EAKLGIVPDS GGMLRLPKLL PAPIVNELMM TGRSMDAQEA LRWGVVNRVV EQEALMETAR ELANEISQSA PLALAAIKEI YRETGELSVE QGYAHIRGGQ LKHYPSVLHS EDALEGPAAF AEKRDPVWQG K
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