| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2668 |
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| Symbol | |
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| ID | 4923121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3156144 |
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| End bp | 3157781 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164263 |
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| Product | 2-nitropropane dioxygenase, NPD |
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| Protein accession | YP_001094793 |
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| Protein GI | 127513596 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
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| TIGRFAM ID | [TIGR02814] PfaD family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGA CTACCACAAA CGAGCAGCTT TCTCCCTGGC CCTGGCAGGT AAGCGACAGC
AAGATCAGCT TCGACACGGC CGCCATGGCA ACTGCGCTCA AAGATTTCAG CCGCGCCTGC
TACCTGGTCA ACGACAGCGA CCTGGGGGTG GGCATCGCCA CCGAGGCGAG CCTGATGACC
AATAATCAAG GCTCGGGTGC TCAGGCCTCG GGCCACCCGG TCAGCGCCTT CACACCTGCT
CTGGGCACTG AGAGCCTGGG CGATGGCAAC TTTCGCCGGG TGCACGGTGT CAAGTACGCC
TACTATGCCG GCGCCATGGC CAATGGCATC TCGTCGGAAG AGCTAGTGAT CGCCCTGGGC
AAGGCGGGCA TCTTATGCTC CTTCGGCGCC GCAGGACTCA TCCCAAGCCG GGTTGAGCAG
GCGATCGCAC GGATCCAAAC CGCGCTACCT AATGGCCCCT ACATGTTTAA CCTGATCCAC
AGCCCGAGCG AGCCTGCGCT TGAGCGCGGC AGCGTCGAGC TCTTCCTTAA GCACAAGGTG
CGCACGGTCG AGGCCTCGGC CTTCCTGGGA CTGACGCCGC AGATCGTCTA CTATCGCGCC
GCCGGCCTGA GCCGCGACGC CAACGGCCAC ATCATCATAG GCAACAAGGT GATCGCCAAA
GTGAGCCGCA CCGAGGTCGC CGAGAAATTT ATGCAGCCGG CTCCCGTCAA GATGCTGCAG
AAGTTGGTGG ACGAGGGCTT GATCACCCAT GATCAGATGG AGATGGCCCA GACAGTGCCC
ATGGCAGACG ATATCACCGC CGAGGCGGAC TCGGGCGGCC ATACGGATAA TCGTCCTCTG
GTGACCCTGC TGCCGACCAT TTTGGCGCTC AAGGAGGAGA TCCAGGACAA GTATCAATAT
GCCACGCCCC TGCGCGTCGG TTGTGGCGGC GGCATAGGCA CCCCGGATGC GGCTCTGGCG
GCCTTCAACA TGGGCGCGGC CTACATAGTG ACAGGCTCAA TCAACCAGTC CTGTGTCGAG
GCGGGCGCCA GCGAGCACAC CCGCAAACTG CTGGCCACCA CAGAGATGGC CGATGTCACC
ATGGCGCCGG CCGCCGACAT GTTTGAGATG GGCGTTAAGC TACAGGTGGT CAAGCGCGGC
ACCCTGTTCC CCATGCGCGC CAACAAGCTA TATGAGATCT ACAGCCGCTA CGACTCGATA
GAAGCGATAC CTGTCGATGA GCGCGACAAG CTGGAGAAGC AAGTATTTCG CGCCAGCCTG
GATGAGATCT GGGCCGGCAC AGTCGCCCAC TTTAACGAGC GAGATCCTAA GCAGATTGAG
CGCGCCGAGG GGAATCCCAA GCGTAAGATG GCGCTGATCT TCCGCTGGTA CCTGGGGCTG
TCGAGCCGCT GGTCTAACAC AGGTGAGCAG GGCCGCGAGA TGGACTATCA GATCTGGGCA
GGTCCCGCGC TGGGCGCCTT CAACCAGTGG GCCAAGGGCA GCTATCTGGA TGACTACAGC
AAACGTCATG CTGTGGATCT GGCCAAGCAC CTGATGTACG GCGCCGCTTA TCTGGCGCGG
GTCAACGCCA TCAAGGCACA GGGGATCAAG CTGCCTGGCG AGCTCTTGCG TTACAAGCCG
CAAGTGGCGC TGGCGTAA
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| Protein sequence | MNPTTTNEQL SPWPWQVSDS KISFDTAAMA TALKDFSRAC YLVNDSDLGV GIATEASLMT
NNQGSGAQAS GHPVSAFTPA LGTESLGDGN FRRVHGVKYA YYAGAMANGI SSEELVIALG
KAGILCSFGA AGLIPSRVEQ AIARIQTALP NGPYMFNLIH SPSEPALERG SVELFLKHKV
RTVEASAFLG LTPQIVYYRA AGLSRDANGH IIIGNKVIAK VSRTEVAEKF MQPAPVKMLQ
KLVDEGLITH DQMEMAQTVP MADDITAEAD SGGHTDNRPL VTLLPTILAL KEEIQDKYQY
ATPLRVGCGG GIGTPDAALA AFNMGAAYIV TGSINQSCVE AGASEHTRKL LATTEMADVT
MAPAADMFEM GVKLQVVKRG TLFPMRANKL YEIYSRYDSI EAIPVDERDK LEKQVFRASL
DEIWAGTVAH FNERDPKQIE RAEGNPKRKM ALIFRWYLGL SSRWSNTGEQ GREMDYQIWA
GPALGAFNQW AKGSYLDDYS KRHAVDLAKH LMYGAAYLAR VNAIKAQGIK LPGELLRYKP
QVALA
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