| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2641 |
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| Symbol | |
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| ID | 4924119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3116519 |
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| End bp | 3117991 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640164236 |
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| Product | PTS system, glucose-like IIB subunint |
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| Protein accession | YP_001094766 |
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| Protein GI | 127513569 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
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| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.696935 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.544086 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAACC CAATGGACCC AACTCATCAA CGACCACGCG GCCGACTGAG CCGGATCAGT
CGTCAATGGT TTAAGTTTGC CCAGCGGCTG AGCCAGGCCC TGCTGCTGCC TATCGCCATC
TTGCCCGCTG CGGGGGTGAT GATTGGTCTT GCGACCAATC CCATTCCTTT TATTTCGGCG
GATCTCGCCA CACTCATGTG GACCGTTGGC AACCTGGTGT TCTCCATGAT GCCCATGCTG
TTTGCGGTCA CTATTGCCAT AGGCTTCTGT CGAGATCAGG GGATAGCCGC CTTCAGTGCG
GTCTTCGGCT ATGGGGTTTT CTTCTCTAGC CTGTCGGCGC TGGCGAAGAT CTATCATTTG
CCGACCGAGA TGATCTTGGG GCAGGCCACC ATAGACACGG GCATTGCCGG TGGCATGATG
GTAGGCGCCT TTACCTGTCT TGTGGTCAAG CACAGCGAGC GCATACGCCT GCCGGCGGTA
TTCTCCTTTT TCGAGGGACG CCGCTCGGCG CCACTGTTAA TGCTGCCGAT GGCCATCTTG
CTGGCCTACC TGTTTCTGCT CCTGTGGCCC TTGCTATCTA ACTGGATCGA GCAGATCTCA
AACTGGGCCG TCTATCAGGA GCCCGCCTCG GCCTTTGCCG TATATGGCAT GGTGGAGCGC
TTGCTGATCC CACTTGGGCT ACACCATATC TGGAATGCTC CCTTTTATCT GGAGATGGGG
CAGTATTTCA ATGGCGATGA ATGGGTAAGA GGTGAGGTTG CCCGCTATCT GGCTGGCGAC
CCCCAGGCCG GAAATCTGGC CGGTGGTTAC CTGATTAAGA TGTGGGGCCT GCCTGCGGCC
GCGCTGGCCA TCTGGCGCTG CGCCGATAAA CATGAGCGTA ACAGGGTCGC CGGGATCATG
CTGTCGGCGG CTACTGCCTG TTGGCTGACC GGGGTCACCG AGCCCATCGA ATTTGCCTTC
ATGTTTGTCG CCCCGCTGCT GTTTATTCTG CATGCCCTGA TGACGGGGAT CGCCTATGCG
GTGACGATTT CGCTGGATAT CCACCATAGC GTGGTGTTTT CCCATGGCTT AGTCGATTTC
AGTCTATTGC TGGGACAGTC CAGAAATGTA GAATGGTTTT TGATCCTCGG CCCCCTCACG
GCGGTTATCT ATTATCTGGT GTTTCGCGGC GCCATCTTGG CGTTTAACCT CAAGACCCCG
GGACGCATGG AGGCGGGCAG CGGTCAGCGG GCCGGGCTGA TCTCCATGAT CACCGCGTTG
GGCGGACAGG ATAATATCAA TGAGTTAACC GCCTGCCTGA CGCGACTGCG TATCAGCGTG
AAACATGCCG AGTTGGTGGA TAAGGCCCAG CTCAACAAGC TCGGCGCCAA GGGCGTGGTA
TTGGTTGGAA ACGGGGTTCA GTTGGTTTAT GGCACGAAAG CGGAGAGTAT CAGGCGCTTA
TTGCAGCGCT ATCTAGATAG GCACAAATCG TGA
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| Protein sequence | MVNPMDPTHQ RPRGRLSRIS RQWFKFAQRL SQALLLPIAI LPAAGVMIGL ATNPIPFISA
DLATLMWTVG NLVFSMMPML FAVTIAIGFC RDQGIAAFSA VFGYGVFFSS LSALAKIYHL
PTEMILGQAT IDTGIAGGMM VGAFTCLVVK HSERIRLPAV FSFFEGRRSA PLLMLPMAIL
LAYLFLLLWP LLSNWIEQIS NWAVYQEPAS AFAVYGMVER LLIPLGLHHI WNAPFYLEMG
QYFNGDEWVR GEVARYLAGD PQAGNLAGGY LIKMWGLPAA ALAIWRCADK HERNRVAGIM
LSAATACWLT GVTEPIEFAF MFVAPLLFIL HALMTGIAYA VTISLDIHHS VVFSHGLVDF
SLLLGQSRNV EWFLILGPLT AVIYYLVFRG AILAFNLKTP GRMEAGSGQR AGLISMITAL
GGQDNINELT ACLTRLRISV KHAELVDKAQ LNKLGAKGVV LVGNGVQLVY GTKAESIRRL
LQRYLDRHKS
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