| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2638 |
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| Symbol | dapD |
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| ID | 4923900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3114164 |
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| End bp | 3114988 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164233 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001094763 |
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| Protein GI | 127513566 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00531971 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.525534 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG TATAGAAACA GCTTTTGAAG CTCGCGCAGA AATCACCCCT
ACCACGGTCG AGCCGAGTGT TCGCGCCGAC GTAGAGAAAG CCATCGCCAT GCTAGACACA
GGTGAAGCGC GCGTCGCCGA GAAGATCGAC GGTCAATGGA ATGTACACCA GTGGCTAAAG
AAAGCCGTAT TACTCTCTTT CCGCATCTTC GACAACCAGG TGATCGACGG CGCGGAAACC
AAATTCTTCG ACAAAGTACC GATGAAATTT GCCGACTATG ACGAGGCACG TTTCAAGCAG
GAAGCGATCC GTGTGGTACC ACCTGCCGCT GTGCGTAAAG GCTCTTTTAT CGGCAAGAAC
ACCGTACTCA TGCCGTCTTA CGTTAACCTC GGCGCCTATG TCGATGAAGG CACCATGGTT
GATACCTGGG CGACCGTTGG TTCGTGCGCC CAGATTGGTA AGAACGTGCA CCTTTCAGGC
GGTGTCGGCA TCGGCGGCGT GTTGGAGCCG CTACAGGCAG GCCCTACCAT CATCGAAGAC
AACTGCTTCA TCGGTGCGCG CTCAGAGATC GTCGAAGGCG TAGTGGTCGA AGAAGGCAGT
GTTATATCTA TGGGGGTATA CATAGGCCAG AGCACCCGCA TCTATGACCG TGAAACCGGC
GAGATCCACT ATGGCCGTGT GCCAGCGGGT TCGGTTGTCG TATCAGGCAC CCTGCCCTCT
CAGTGTGGCA AATATAACTT GTATGCCGCC ATCATAGTGA AAAAGGTCGA TGCCAAGACC
CGCGGCAAGG TAGGTATTAA CGAGTTGCTA CGCATCGTCG ATTAA
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| Protein sequence | MEALRQRIET AFEARAEITP TTVEPSVRAD VEKAIAMLDT GEARVAEKID GQWNVHQWLK
KAVLLSFRIF DNQVIDGAET KFFDKVPMKF ADYDEARFKQ EAIRVVPPAA VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIYDRETG EIHYGRVPAG SVVVSGTLPS
QCGKYNLYAA IIVKKVDAKT RGKVGINELL RIVD
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