Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2627 |
Symbol | |
ID | 4923889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3100342 |
End bp | 3102825 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640164221 |
Product | surface antigen (D15) |
Protein accession | YP_001094752 |
Protein GI | 127513555 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0218715 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.613387 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATTGA ATAAAATTTT TGCCTCGATG TTATTAGTCG GTGCGTCTTT ATCAGGGAAG GGTTGGGCCG ATACATTCCA GCCTTTTGAA GTGACCGACA TCCAGGTTAA GGGACTGCAG CGTGTTGCAC TGGGTGCGGC GCTGTTGAAT ATTCCTATCA AGGTGGGAGA CACGGTCGAC GAGATGCGTC TGCAGCAGGC GATTAAGAGC CTGTATTCCT CGACTAACTT CGAGCATATC GAGGTGAGCC GCGATGGCAG CGTCTTGGTA GTAACGGTCA AAGAAAGGCC TACCATCAGC GTCGTGACCT TTGAAGGCAA CAAGGACATT AAAGACGAGC AGCTGCAAGA GAGTCTCGAC GGCAGTGGCG TCAAGGCCGG TGAGTCGCTG GATCGCACCA TGCTCAGCGG CATCGAGAAG AGCCTGCAGG ACTTCTACTA TGGCGTGGGT AAATATGGCG CCAAGGTTGA GGCTCAGGTG ATTAACCTGC CGCGTAACCG TGTCGAGTTG AAATTTAAGT TTACCGAAGG TTTGGCGGCA GAGATTCGTC AGATCAACGT GGTGGGCAAC ACTGTCTTTA GCGACGCCGA ACTGATCGGC ATGCTGGAGC TGAAAGACTA TGTGGCATGG TGGGATCTCT TCGGTGAGCG CCGCTATCAG AAGCAGAAGC TGCAGGCCGA CCTTGAAACC ATCAAGACCT TCTACCACAA CCGCGGTTAT ATCCGTTTCG AGGTGACCTC GACTCAGGTG GCGATGACCC CTGACCGTAA GGGTCTCTAC ATCACCATCA ACGTTGACGA GGGTGAGCAG TACAAGGTTA AAGAAGTTAA CCTGACTGGC GACCTCATGG GCCGCGAAGA GGTGATGCAG GCGATTCTGC CGATCAAGGT AGGCGATACC TATAACGGCG CGGATGTGAC CTTTACCGAA GAGATGTATG GCAAGTATCT GGGCCGTTTC GGATATGCCT ACCCAGAGGT GAAGACCTAT CCTGAGATCG ATGATGAGAC TAAAGAGGTC GCCCTCAACG TCAACATCAA GCCGGGTAAG CGCGTCTATG TACGTAGCAT TAACTTTACC GGTAACCAGG TTACCAAAGA TGAGGTGATG CGCCGCGAGC TGCGTCAGAT GGAAGGCGCT TGGCTGAACT CGGCCCAGGT TGAGCAATCC AAGGCGCGTC TGAACCGCCT GGGTTACTTC GAAACCGTCG ATACTCAGAC GGTTCAGGTG CCGGGCACAG ATGACCTGGT GGACGTCGAC TTCACCGTGA AGGAGCAGCC ATCAGGCTCG TTCAACGCGG GGGTGGGTTA TGGTACCGAG TCGGGCCTGA GCCTACAGTT CGGTGTGCAG CAGAGTAACT TCCTGGGTAC AGGTAATCAG GCGGGTATCA ACCTTAACAC CAACAAATAC TCGAAGAACG TCAACATCAA CTACACAGAT CCTTACTTCA CCAAAGATGG CGTGAGCCTG GGTGGTAGCA TCTACTGGAA CGAGTTTGAC GCTCAGGAAG CGAACCTCGA ACGCTATAAG AACAGTTCTT ACGGTATTGC TGTCAACTCC GGCTTCCCGA TCAACGAATA CAACCGTATC AACGGTGGTA TCGGCTATCG TCACAACAGC ATCTCGGAGA TCTCGGCCTA CGAGCAGGCC CTGCGCTTCT ACAACATCTA TCGTGATGCC AACGATCCTA ACGCCGACCT GTCGTTCGAT AACTTCGAGC TGACCCTCGG CTGGTACCGC AGCACGCTTA ACCGCGGCAC CTTCCCAACC GATGGTTCGT CACAGCGTCT GAGCGGCAAG ATGACGGTGC CAGGTTCGGA TCTGCAGTAC TTTAAGACAG ATTTCGATAC CAGCTTCTAC TGGCCAATCA ACCGCAGCCA CAGCTTCGTG CTCCTGACTA AGGCGCGCCT GGGTTATGGT AACGGTTATG GTCAGTACAA CGACAACGAC CAGATCCTAC CTTTCTGGGA GAACTACTAC TCGGGTGGTA GCAGCTCACT GCGTGGCTTC AAGTCTAATT CTGTGGGTCC ACGTTCATTC TACCTGTATC GTGGTAGTGA GCCGTGCTCG CCAGATCCAG CAGGGGATAC TTGTACCTTG CCAGGGGATC CTAACCGTGT CACTGTGAGC GGTGGCCGCT CTATCGGTGG TAACGCCATC GCTACGGCGA GTGTTGAGAT GATAGTGCCA ACTCCATTCC TGGATGAGGC CTACACTAAC TCGGTGCGTA CCAGCTTCTT CGTCGATGCG GGTAACGTCT GGGATACCGA GTTCGACTAT GACGCCTATC GCTTCCTGCC GGCTGAGCAG TTCGACAAGT TGTCTGACTA TTCAGACCCA GGACGTATCC GCGCCTCGGC GGGGATGAGC GTACAATGGT TGTCGCCAAT GGGACCTATG GTATTTAGTC TTGCATGGCC AATCAAAAAA TATGAAGATG ATGACACAGA GATCTTCTCG TTCAACATTG GTAAAACTTT CTAA
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Protein sequence | MRLNKIFASM LLVGASLSGK GWADTFQPFE VTDIQVKGLQ RVALGAALLN IPIKVGDTVD EMRLQQAIKS LYSSTNFEHI EVSRDGSVLV VTVKERPTIS VVTFEGNKDI KDEQLQESLD GSGVKAGESL DRTMLSGIEK SLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFKFTEGLAA EIRQINVVGN TVFSDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTFYHNRGY IRFEVTSTQV AMTPDRKGLY ITINVDEGEQ YKVKEVNLTG DLMGREEVMQ AILPIKVGDT YNGADVTFTE EMYGKYLGRF GYAYPEVKTY PEIDDETKEV ALNVNIKPGK RVYVRSINFT GNQVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGYF ETVDTQTVQV PGTDDLVDVD FTVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QSNFLGTGNQ AGINLNTNKY SKNVNINYTD PYFTKDGVSL GGSIYWNEFD AQEANLERYK NSSYGIAVNS GFPINEYNRI NGGIGYRHNS ISEISAYEQA LRFYNIYRDA NDPNADLSFD NFELTLGWYR STLNRGTFPT DGSSQRLSGK MTVPGSDLQY FKTDFDTSFY WPINRSHSFV LLTKARLGYG NGYGQYNDND QILPFWENYY SGGSSSLRGF KSNSVGPRSF YLYRGSEPCS PDPAGDTCTL PGDPNRVTVS GGRSIGGNAI ATASVEMIVP TPFLDEAYTN SVRTSFFVDA GNVWDTEFDY DAYRFLPAEQ FDKLSDYSDP GRIRASAGMS VQWLSPMGPM VFSLAWPIKK YEDDDTEIFS FNIGKTF
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