| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2568 |
|---|
| Symbol | |
|---|
| ID | 4921056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3025644 |
|---|
| End bp | 3027632 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640164162 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001094693 |
|---|
| Protein GI | 127513496 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCATA AGCCAAATCG TATGGAAGGG GAAGCCGATA TGTCGACCGT GAGTGGCGGG
CGCATGTCAT TCGGAGAAGA TCACATGAAG GATTTGCATA ATCAGTTACA CCAGGAATCT
ATCGATAATC CTAACGCCTT CTGGGGCGAG GCCGCCGGGG CCTTAGCCTG GGACAAGACG
TTCGAGCGGG TACTCGATGA CAGTCAGGCA CCTATGTATC GCTGGTTTAG CGGCGGGCAG
CTCAATACCT GTTATAACGC GGTCGACAGA CACGTGGAGG CCGGGCGTGG CGAGCAGGTG
GCGATTCAAT ATGTGAGCCC GATTACGGGC ACAGAATATG GGATCACCTA CAACGAGCTG
CAGGCCCAGG TGAGCCGACT GGCCGGCTAC ATGGCCAGCC AGGGCGTCGT CAAAGGCGAC
AGGGTGATCA TCTATATGCC CATGGTGCCA GAGACCGCCT ATGCCATGCT GGCCTGTGCG
CGCCTTGGGG CGATTCACTC AGTGGTGTTC GGCGGTTTCG CCGCCAACGA GCTGGCGACC
CGAATCGATG ATGCCACGCC TAAGATGATC CTCTCCGCCT CCTGCGGCGT CGAGCCGTCG
GGCGTGGTGG CCTACAAGCC GCTGCTGGAC GATGCGCTGG AGCAGGCGAG CCATAAGGTG
GAGCAGTGTG TGATCCTCAA TCGTCCTCAG CTACAAGCTG ACTTAGTCGA CGGCCGTGAT
GTCGACTGGC AGGGTGCCAT GGCCGATGCG CCAAACATAG AGTGTCAGAC GGTAGAGGCG
ACCGATCCCC TTTATATCCT CTATACCTCG GGCACCACGG GTCAGCCCAA GGGGGTCGTG
CGCGACAATG GCGGCCATGC CGTGGCGCTC GCCTGGTCGA TGAAGCATAT CTATGATATC
GACCCGGGAG ATGTCTTCTG GGCGGCCTCG GATGTGGGCT GGGTGGTTGG TCACTCTTAT
ATTGTCTATG GTCCCTTACT GGTTGGCGCC ACGACTGTAC TGTTCGAGGG TAAGCCTGTG
GGCACACCGG ATCCCGGTAT CTTCTGGCGC ACCATAGCCA AGTATAATGT AAAGAGTTTC
TTTACCGCGC CGACGGCGAT CCGCGCCATC AAACGCGACG ATCCCGAGGG CGATTACCTC
AAGGATGTGG ACCTTAGCTG TCTCGGTACT CTGTTCCTTG CCGGTGAGCG CTGCGATCCC
GATACCCTGC ACTGGGCCGA GCAGCAGCTC GACAAGCCGG TGATCGACCA CTGGTGGCAG
ACGGAAACCG GCTGGCCGGT CGCCGCCAAC CTGATGGGCA CGGCGCCGGT ACCCGTCAAG
GCGGGCTCTC CTGCCAAGGC GGTGCCTGGT TATGATGTGC AGGTGCTCGA TGAGATGGGC
GATGTCGTGG CGCCGGATCA GTCGGGCAAT GTGGTGATCA AGCTGCCGCT GCCGCCGGGC
ACACTGGCGA CTCTGTGGCA AAACGAGGGA CGCTACAAGG AGAGCTACCT CTCCATGTAT
CCGGGTTACT ACCTCACAGG GGATGCCGGT TACATGGATG AAGATGGCTA TCTCTATATC
ATGAGCCGCA TCGATGACAT CATTAATGTG GCCGGTCACC GTTTGTCGAC CGGACGCTTC
GAAGAGGTGT TGTGTCAGCA TGAGGCGGTG GCCGAGGCGG CGGTGATCGG GGTAGACGAC
AAGCTCAAGG GGCAGGTGCC TCTGGGTCTG GTGGTGCTCA AGAAGGGCTG CGATCTCAGC
GACGAGCAGC TCTACAAGGA GCTGATCGCC CTGGTACGTG AGCAGATTGG CCCTGTGGCG
GCCTTTAAGC TGGTGAGCGC CGTGCCTAAG CTGCCTAAGA CGCGCTCGGG CAAGATACTG
CGCGGCACCA TGCGTAAGAT TGCCGACAAT CAAGAGTTCA AGATGCCGGC AACCATAGAA
GATCCCTACA CGCTCGAGCT GGTGCGCAAC GCCCTGACCC GTATGGGTTA TGCCGACGCT
CACGTCTAG
|
|---|
| Protein sequence | MAHKPNRMEG EADMSTVSGG RMSFGEDHMK DLHNQLHQES IDNPNAFWGE AAGALAWDKT
FERVLDDSQA PMYRWFSGGQ LNTCYNAVDR HVEAGRGEQV AIQYVSPITG TEYGITYNEL
QAQVSRLAGY MASQGVVKGD RVIIYMPMVP ETAYAMLACA RLGAIHSVVF GGFAANELAT
RIDDATPKMI LSASCGVEPS GVVAYKPLLD DALEQASHKV EQCVILNRPQ LQADLVDGRD
VDWQGAMADA PNIECQTVEA TDPLYILYTS GTTGQPKGVV RDNGGHAVAL AWSMKHIYDI
DPGDVFWAAS DVGWVVGHSY IVYGPLLVGA TTVLFEGKPV GTPDPGIFWR TIAKYNVKSF
FTAPTAIRAI KRDDPEGDYL KDVDLSCLGT LFLAGERCDP DTLHWAEQQL DKPVIDHWWQ
TETGWPVAAN LMGTAPVPVK AGSPAKAVPG YDVQVLDEMG DVVAPDQSGN VVIKLPLPPG
TLATLWQNEG RYKESYLSMY PGYYLTGDAG YMDEDGYLYI MSRIDDIINV AGHRLSTGRF
EEVLCQHEAV AEAAVIGVDD KLKGQVPLGL VVLKKGCDLS DEQLYKELIA LVREQIGPVA
AFKLVSAVPK LPKTRSGKIL RGTMRKIADN QEFKMPATIE DPYTLELVRN ALTRMGYADA
HV
|
|---|
| |