| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2560 |
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| Symbol | |
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| ID | 4921100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3016939 |
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| End bp | 3018471 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164154 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_001094685 |
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| Protein GI | 127513488 |
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| COG category | [K] Transcription |
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| COG ID | [COG1396] Predicted transcriptional regulators |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCA ATAGCAGCTT GATGAGAAAA TCGCATTTCC TGGGCACTAA GATACGCAAT
CTCAGGAAAC GTAATAATCT AACCATGGAA GACCTATCGG CCCGCTGTGT CAGGGTGGAT
GCGGATTCCG CGCCCTCTGT CTCCTACCTC TCCATGATAG AGCGCGGCAA GCGCGTGCCC
AGTGCCGGCA TGTTGGCAGT GATCGCCGCC GTGTTTCAAA AGGAGGTAGA TTGGTTTCTC
GACGACGCTC CCGAGGAGCA GGCGATCACG CCGGTCAAGG GGTCTCGCGG CGGGATCAGT
GGCATGGCGC TGGAGCCAAG CTTCTTGTTT TCTAACGAGA TATTGCAGAT CGCCATCCCT
GAGATGCTCT CTCAGACGGG GATCAGCGGC CGGCAATTTG CGCACCTGTT GATCCGTGCC
CATCAGGAAC ATCATCAGAA TCATTTTCCC GATCTCGAGC GCGCCGCCGA AGAGGTGGGG
CTCAAACGCA TGCCCCTGAG CCTCGAGGAT CTGCTGGCGA TAGTCCAACG TCTCGGCCTG
GTAGTAAAAT GGTTTACCCG CGCGCCCAAG GCGATCCGTG AAGAGGCGGG GGCCGGCAAG
CAGCACATCA TCACCTCCTA TTTCGAGCAG CCCAACAAGA TCTGCCTCAA CCAGCTGCTC
AACCAGCATA CCCGCCGCCT CAAGTACGAC CTGGCAGTCC ATATCGGCCA CAGCGTGCTG
CACAATAAAG ACGGTTTAAA AAGTATCATG GTGGCCGGAC GCAGCCATGG CACCAGCCTG
GTGGATGAGG CGGACAATCG TGGGCAATCC TCCACAGTGG ACGCCCAGGA TATCCTGCAT
GCCTGGCGGG ATTTCGAGTC CAGCTTCTTC GCCGGCGCCC TACTCTGTCC TAAGGTGCCC
TTCAGGCAGC TGCTCGACCG TCACGGCTAT GAGATAGATG TGGCCAAGTT GGTGGATGTC
TCTCCCTCGG TGGCCATGCG CCGCATGACG GCGGTCTCCC CCTATAGCCA CTGGCACTAT
TTCGATGCCT ACTCGCCCGG TAAGCTCAAG GCCGTGTATC GCGGCAACGG TATTCCCCTG
CCCTGGGGCA ACATGCGCCA GGTGGAAGAT CCCTGCCAGC ACTGGGCGGT GTTTAGGATG
ATCAACGCCT CGACCCAGGG CTCCTCGGCG CAGATCTCCA TCCTGGATGT GGCCAACGAG
CCCAAGATCT ACTGCTGCGA ATCGATTCGG GTGAAAGACC TGGCGGGCAA TCCCCATGTG
CTCTGCGCCG GTATCGACCT TAACCCAGCC ATCGAGGCCC AGGGCGGCGA TGCCAACCAG
GTGGCGCAGC AACTCAAGGA GGTCTGTGTG GACAATGGCG GCTCGGCGCC CCTGCCCAGC
AACATCAAGA CGGACATCAA GCGTGTGGCG AAGATCCTCA ACATTAACTG GGTGGAGCGT
GGCATCGACA GCGAGGCTCG GCTCATCTGT TCCCGCGGCG CCAGCTGCCC CCGCAAGCCT
AGCTGCTACG AGAGTGGTGG CTGTCAGGGC TAG
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| Protein sequence | MKTNSSLMRK SHFLGTKIRN LRKRNNLTME DLSARCVRVD ADSAPSVSYL SMIERGKRVP
SAGMLAVIAA VFQKEVDWFL DDAPEEQAIT PVKGSRGGIS GMALEPSFLF SNEILQIAIP
EMLSQTGISG RQFAHLLIRA HQEHHQNHFP DLERAAEEVG LKRMPLSLED LLAIVQRLGL
VVKWFTRAPK AIREEAGAGK QHIITSYFEQ PNKICLNQLL NQHTRRLKYD LAVHIGHSVL
HNKDGLKSIM VAGRSHGTSL VDEADNRGQS STVDAQDILH AWRDFESSFF AGALLCPKVP
FRQLLDRHGY EIDVAKLVDV SPSVAMRRMT AVSPYSHWHY FDAYSPGKLK AVYRGNGIPL
PWGNMRQVED PCQHWAVFRM INASTQGSSA QISILDVANE PKIYCCESIR VKDLAGNPHV
LCAGIDLNPA IEAQGGDANQ VAQQLKEVCV DNGGSAPLPS NIKTDIKRVA KILNINWVER
GIDSEARLIC SRGASCPRKP SCYESGGCQG
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