Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2524 |
Symbol | |
ID | 4921229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2974805 |
End bp | 2976982 |
Gene Length | 2178 bp |
Protein Length | 725 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640164118 |
Product | decaheme cytochrome c |
Protein accession | YP_001094649 |
Protein GI | 127513452 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000418395 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAA AGTTCAATGT TAATGCAGCG ACAAAAGCTG TATTAGGTGC CGGACTTCTC TCTTTCGCCT TATCCGGTTG CGGCAGCGAC GGTAAAGATG GCGAAGATGG TAAGGACGGC GTCATTGGTG TCAACATCGA CACTACACCT ACCCTTCAGG CAACCTTTAC CAATGCGACA ATCGACGCAG GTAAAGTCAC GGTCGACTTC AAGCTTCAAG ATGCAAACGG CGTTGCCGTA CTTGGGCTCA CCAAAGACCA CGACCTGAGA TTTGGTGTCG CGCAGCTGAC CCATGTGGTT GAAACCAAAG CCGATGGCGA AACTGCCGAT CGCGGCTTCC AATGGCAGGC CTACATCAAC AGCGAGAAGG CGCCTAACCC AGACTGGGTA CCAGAGGGCG ATACCGACAT CAATCCGTCT AACCAGTTCC AAGCCAACGT AGAGCAGGCC GCCAAGTGCG ACGACTGCCT AGTCGACAAC GAAGACGGTA GCTACACCTA TACCTTCCAG ACCAACATCG CCAACGTCAC CTCACCAGTC ACTGTGACCT ATGACGCCGA TGCGACTCAG CGTATTACGC TCGAGCTGGA ACAACCTAGC GTCACGGCTA ACGCCAACTA TGATTTCCAA CCTTCTAGTG GCGCGACCAA AGGTATTCAA ACCCGCAACG TGGTTGCTAT CGAGACCTGT TACACCTGTC ACCAGCCAGA GAGTCTGGCA CTGCATGGTG GCCGTCGTAT TAACATCGAA AACTGTGCCT CTTGCCACAC CGCCACCTCA GGCGATCCAG AAACCGGCAA CAGCGTCGAC TTCACTTACA TGATCCACGC CATTCACCGT GGTGAAGAAC GTCACACCTA TGATGCCGAC GGCAACCAGG TGCCAGCACC TTACAAGGTG ATCGGCTATG GCGGCGGCGT ACATGACTAC GGCAAGGTGA TGTTCCCACA AAAACCAGCG GCCGATTGTA GCGCCTGTCA CGTCGAGGGC AGCAATGCAC CGGCAAATGC CGACCTTTAC AAGGCAGACC TGAGCAACAC AGCCTGTATC GCCTGTCACA GCGAGAAACC ATCTTCTCAC CACAGCAGCA CAGACTGTAT GGCCTGTCAC AACAGCACCG AACCATACGG CGGCACAGGT AGCGCCTTCA AGCGTCATGG CGACGTATTG AAAGCGTACC AAGATGCCGA GGCGATGAGC GTTAAGTTCA GCAACATAGG TGTTGATGCT AATGGTAAGT TCGTCTTTGA CGTACAGGTA CTGGGTGCCG ATGGCGCCGC CCTGGATGGC GAGCTATTAG ATCCAAAATC ACGTGTGGTT GTGGCCTGGG ATATCGACAA AGACTTCCCT GCCTACAGCG ATGCCTCTTA TAGCAATCGT CGTATCGCCC TAGAAGAAGG GGTTTACAAC GCCGAGACTA AGACTTACAC CCTAACCGGT ACTAAGTTTG ATCTACCTGC CGATGCCAAC GGCAAGACCT TCGAGCTCTG GTCAGCGCTG AAAGTCTGCT TCAACAACGG TGGCTATGGC GTTGCCGAGA TTAAGCCTAC CGCCTGTGCG ACCGAAGGCG TACGTAAGGT AGAAGCTAAA CAAGAAGCGA TGCACTTCGT CTGGAAAGAT GGCGCCATCG ACGACAGCGC AACACCTGCC GAGCGTCGCG ACATCATTGA CCCTAGCAAG TGTCAGGGCT GCCACAACCA GGAAAACCAT CACTACAACA ATGGTTACAA CTGTCAGACT TGCCACACTT CTGACAAGAC CACTAAGGCT AACGCCAGCG AGCAGTATCC AAATGCGAAG AAACCAACCA GCTACGCCTA CAAGGCGCAC GAAGCTGAGG GTCACTTCCT CAAGTATGCT GGCGTAGGTT CTAGCACTGT TGTGAAAACA GACTGTATGA CCTGTCACAC TGACGGCGGT ATCGAACTGG GCCGCGCTCC TGAGCGTACA TGGCGCTATG GTAACCTGTT AACAGGTGAA GACATCTGGG TATCTTCCGA TGCAGGTGCT TGTATGAGCT GTCACCAGAA ATACCTGAGC GATGCAGCCA AGTCTCACAT CGAGACCAAC GGCGGTATCT TAGACGGTGT TGATGCCGAT GACGTACGTA CTCGCGCAGC AGAAACCTGT AAGACCTGTC ACACACCTGA AAAGGTGATG GAACTGCACG GTCACTAG
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Protein sequence | MMKKFNVNAA TKAVLGAGLL SFALSGCGSD GKDGEDGKDG VIGVNIDTTP TLQATFTNAT IDAGKVTVDF KLQDANGVAV LGLTKDHDLR FGVAQLTHVV ETKADGETAD RGFQWQAYIN SEKAPNPDWV PEGDTDINPS NQFQANVEQA AKCDDCLVDN EDGSYTYTFQ TNIANVTSPV TVTYDADATQ RITLELEQPS VTANANYDFQ PSSGATKGIQ TRNVVAIETC YTCHQPESLA LHGGRRINIE NCASCHTATS GDPETGNSVD FTYMIHAIHR GEERHTYDAD GNQVPAPYKV IGYGGGVHDY GKVMFPQKPA ADCSACHVEG SNAPANADLY KADLSNTACI ACHSEKPSSH HSSTDCMACH NSTEPYGGTG SAFKRHGDVL KAYQDAEAMS VKFSNIGVDA NGKFVFDVQV LGADGAALDG ELLDPKSRVV VAWDIDKDFP AYSDASYSNR RIALEEGVYN AETKTYTLTG TKFDLPADAN GKTFELWSAL KVCFNNGGYG VAEIKPTACA TEGVRKVEAK QEAMHFVWKD GAIDDSATPA ERRDIIDPSK CQGCHNQENH HYNNGYNCQT CHTSDKTTKA NASEQYPNAK KPTSYAYKAH EAEGHFLKYA GVGSSTVVKT DCMTCHTDGG IELGRAPERT WRYGNLLTGE DIWVSSDAGA CMSCHQKYLS DAAKSHIETN GGILDGVDAD DVRTRAAETC KTCHTPEKVM ELHGH
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