Gene Shew_2524 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2524 
Symbol 
ID4921229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2974805 
End bp2976982 
Gene Length2178 bp 
Protein Length725 aa 
Translation table11 
GC content54% 
IMG OID640164118 
Productdecaheme cytochrome c 
Protein accessionYP_001094649 
Protein GI127513452 
COG category 
COG ID 
TIGRFAM ID[TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000418395 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAA AGTTCAATGT TAATGCAGCG ACAAAAGCTG TATTAGGTGC CGGACTTCTC 
TCTTTCGCCT TATCCGGTTG CGGCAGCGAC GGTAAAGATG GCGAAGATGG TAAGGACGGC
GTCATTGGTG TCAACATCGA CACTACACCT ACCCTTCAGG CAACCTTTAC CAATGCGACA
ATCGACGCAG GTAAAGTCAC GGTCGACTTC AAGCTTCAAG ATGCAAACGG CGTTGCCGTA
CTTGGGCTCA CCAAAGACCA CGACCTGAGA TTTGGTGTCG CGCAGCTGAC CCATGTGGTT
GAAACCAAAG CCGATGGCGA AACTGCCGAT CGCGGCTTCC AATGGCAGGC CTACATCAAC
AGCGAGAAGG CGCCTAACCC AGACTGGGTA CCAGAGGGCG ATACCGACAT CAATCCGTCT
AACCAGTTCC AAGCCAACGT AGAGCAGGCC GCCAAGTGCG ACGACTGCCT AGTCGACAAC
GAAGACGGTA GCTACACCTA TACCTTCCAG ACCAACATCG CCAACGTCAC CTCACCAGTC
ACTGTGACCT ATGACGCCGA TGCGACTCAG CGTATTACGC TCGAGCTGGA ACAACCTAGC
GTCACGGCTA ACGCCAACTA TGATTTCCAA CCTTCTAGTG GCGCGACCAA AGGTATTCAA
ACCCGCAACG TGGTTGCTAT CGAGACCTGT TACACCTGTC ACCAGCCAGA GAGTCTGGCA
CTGCATGGTG GCCGTCGTAT TAACATCGAA AACTGTGCCT CTTGCCACAC CGCCACCTCA
GGCGATCCAG AAACCGGCAA CAGCGTCGAC TTCACTTACA TGATCCACGC CATTCACCGT
GGTGAAGAAC GTCACACCTA TGATGCCGAC GGCAACCAGG TGCCAGCACC TTACAAGGTG
ATCGGCTATG GCGGCGGCGT ACATGACTAC GGCAAGGTGA TGTTCCCACA AAAACCAGCG
GCCGATTGTA GCGCCTGTCA CGTCGAGGGC AGCAATGCAC CGGCAAATGC CGACCTTTAC
AAGGCAGACC TGAGCAACAC AGCCTGTATC GCCTGTCACA GCGAGAAACC ATCTTCTCAC
CACAGCAGCA CAGACTGTAT GGCCTGTCAC AACAGCACCG AACCATACGG CGGCACAGGT
AGCGCCTTCA AGCGTCATGG CGACGTATTG AAAGCGTACC AAGATGCCGA GGCGATGAGC
GTTAAGTTCA GCAACATAGG TGTTGATGCT AATGGTAAGT TCGTCTTTGA CGTACAGGTA
CTGGGTGCCG ATGGCGCCGC CCTGGATGGC GAGCTATTAG ATCCAAAATC ACGTGTGGTT
GTGGCCTGGG ATATCGACAA AGACTTCCCT GCCTACAGCG ATGCCTCTTA TAGCAATCGT
CGTATCGCCC TAGAAGAAGG GGTTTACAAC GCCGAGACTA AGACTTACAC CCTAACCGGT
ACTAAGTTTG ATCTACCTGC CGATGCCAAC GGCAAGACCT TCGAGCTCTG GTCAGCGCTG
AAAGTCTGCT TCAACAACGG TGGCTATGGC GTTGCCGAGA TTAAGCCTAC CGCCTGTGCG
ACCGAAGGCG TACGTAAGGT AGAAGCTAAA CAAGAAGCGA TGCACTTCGT CTGGAAAGAT
GGCGCCATCG ACGACAGCGC AACACCTGCC GAGCGTCGCG ACATCATTGA CCCTAGCAAG
TGTCAGGGCT GCCACAACCA GGAAAACCAT CACTACAACA ATGGTTACAA CTGTCAGACT
TGCCACACTT CTGACAAGAC CACTAAGGCT AACGCCAGCG AGCAGTATCC AAATGCGAAG
AAACCAACCA GCTACGCCTA CAAGGCGCAC GAAGCTGAGG GTCACTTCCT CAAGTATGCT
GGCGTAGGTT CTAGCACTGT TGTGAAAACA GACTGTATGA CCTGTCACAC TGACGGCGGT
ATCGAACTGG GCCGCGCTCC TGAGCGTACA TGGCGCTATG GTAACCTGTT AACAGGTGAA
GACATCTGGG TATCTTCCGA TGCAGGTGCT TGTATGAGCT GTCACCAGAA ATACCTGAGC
GATGCAGCCA AGTCTCACAT CGAGACCAAC GGCGGTATCT TAGACGGTGT TGATGCCGAT
GACGTACGTA CTCGCGCAGC AGAAACCTGT AAGACCTGTC ACACACCTGA AAAGGTGATG
GAACTGCACG GTCACTAG
 
Protein sequence
MMKKFNVNAA TKAVLGAGLL SFALSGCGSD GKDGEDGKDG VIGVNIDTTP TLQATFTNAT 
IDAGKVTVDF KLQDANGVAV LGLTKDHDLR FGVAQLTHVV ETKADGETAD RGFQWQAYIN
SEKAPNPDWV PEGDTDINPS NQFQANVEQA AKCDDCLVDN EDGSYTYTFQ TNIANVTSPV
TVTYDADATQ RITLELEQPS VTANANYDFQ PSSGATKGIQ TRNVVAIETC YTCHQPESLA
LHGGRRINIE NCASCHTATS GDPETGNSVD FTYMIHAIHR GEERHTYDAD GNQVPAPYKV
IGYGGGVHDY GKVMFPQKPA ADCSACHVEG SNAPANADLY KADLSNTACI ACHSEKPSSH
HSSTDCMACH NSTEPYGGTG SAFKRHGDVL KAYQDAEAMS VKFSNIGVDA NGKFVFDVQV
LGADGAALDG ELLDPKSRVV VAWDIDKDFP AYSDASYSNR RIALEEGVYN AETKTYTLTG
TKFDLPADAN GKTFELWSAL KVCFNNGGYG VAEIKPTACA TEGVRKVEAK QEAMHFVWKD
GAIDDSATPA ERRDIIDPSK CQGCHNQENH HYNNGYNCQT CHTSDKTTKA NASEQYPNAK
KPTSYAYKAH EAEGHFLKYA GVGSSTVVKT DCMTCHTDGG IELGRAPERT WRYGNLLTGE
DIWVSSDAGA CMSCHQKYLS DAAKSHIETN GGILDGVDAD DVRTRAAETC KTCHTPEKVM
ELHGH