| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2509 |
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| Symbol | tig |
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| ID | 4921276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2951564 |
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| End bp | 2952868 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640164100 |
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| Product | trigger factor |
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| Protein accession | YP_001094634 |
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| Protein GI | 127513437 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0544] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) |
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| TIGRFAM ID | [TIGR00115] trigger factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000731467 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.870147 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTTT CTGTAGAAAC AACACAAGGT TTAGAGCGCC GCCTAACTAT CTCTGTTCCT
GCTGAGCAGA TTGAAAAAGC CGTTTCTGAT AGTTTGAAAA ATGAAGCTAA GCGTGCACGT
ATTCCTGGTT TCCGTCCAGG CAAGGTACCT GTAAGCGTGA TCAACAAGCG TTATGGTAAA
GCGATTCGTC AAGAGATCAC TGGCGAAGTA ATGCAACGTA ACTTTATCGA AGCCATCATC
GCAGAAAAAT TGAACCCAGC CGGTGCACCA ACTTTCGTTC CTGGTGAAAC CGATGCTGAA
AACTTCCAGT TTGTTGCTAC CTTCGAAATC TACCCAGAAG TAGAACTAAA AGGCCTAGAT
GCGATTGAAG TTGAGCAACC AACTGCCGAA GTTACCGATG CTGACGTTGA TGCAATGATC
GAAACGCTGC GCAAGCAACA CGCTACGTTC GAAGCGGTTG AGCGTGAAGC TGCCGAAGGC
GACAAGGCGA AGATCGACTT CGTTGGTTCT ATCGACGGTG AAGAGTTCGA AGGCGGCAAG
GCCGAAGATT TCGAACTTCA ACTTGGCAGC GGCCGTATGA TCCCAGGTTT CGAGTCTGGT
GTTGAAGGTC ACAAAGCCGG TGAAGCATTC GATATCGACG TGACTTTCCC AGAAGACTAC
CACGCAGAAA ACCTGAAGGG TAAAGTAGCT AAGTTCGCTA TCACCCTGAA AGAAGTACAA
GCGGCTAACC TGCCAGAAGT TAACGATGAG TTCGCTAAGC TGTTCGGCGT TGCCGACGGC
GGCCTGGAAG CGCTGAAAGT AGAGATCCGT AAGAACATGA GCCGTGAGCT TGAGCAAGCG
CTTAAAGCTA ACGTTAAAGA TCAGGTGCTA AACGGTCTGC TTGAGCAAAA CGAAATCGAA
CTGCCTAAGG CACTAATCGA TGGCGAAGTT AATGTTCTGC GTCAGCAAGC TATGCAGCGT
TTCGGCAACC AAGCCGCTAA CATGCCTGAG CTACCTGCTG ACCTGTTCAC CGAGCAAGCC
GAGCGCCGCG TAAAAGTGGG TCTGCTACTT GGCGAAGTGA TCAAGACTAA CGAGCTGAAA
GCTGACGACG AGCGTGTTCA AGCGCTGATC GCTTCTATGG CTTCTGCCTA CGAAGATCCA
CAGGAAGTTA TTGAATATTA CAATAACAAC CAAGAGATGA TGCAGAACAT GCGTAACGTT
GCGCTAGAAG AGCAAGCTGT TGAAGCACTG CTGAAAACTG CTAAGGTTAC CGAGAAAGCA
GTTCAATTCG AAGAATTTAT GAACAAGGCT ACCGGTCGCG CGTAA
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| Protein sequence | MQVSVETTQG LERRLTISVP AEQIEKAVSD SLKNEAKRAR IPGFRPGKVP VSVINKRYGK
AIRQEITGEV MQRNFIEAII AEKLNPAGAP TFVPGETDAE NFQFVATFEI YPEVELKGLD
AIEVEQPTAE VTDADVDAMI ETLRKQHATF EAVEREAAEG DKAKIDFVGS IDGEEFEGGK
AEDFELQLGS GRMIPGFESG VEGHKAGEAF DIDVTFPEDY HAENLKGKVA KFAITLKEVQ
AANLPEVNDE FAKLFGVADG GLEALKVEIR KNMSRELEQA LKANVKDQVL NGLLEQNEIE
LPKALIDGEV NVLRQQAMQR FGNQAANMPE LPADLFTEQA ERRVKVGLLL GEVIKTNELK
ADDERVQALI ASMASAYEDP QEVIEYYNNN QEMMQNMRNV ALEEQAVEAL LKTAKVTEKA
VQFEEFMNKA TGRA
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