| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2508 |
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| Symbol | clpP |
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| ID | 4921354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2950863 |
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| End bp | 2951474 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640164099 |
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| Product | ATP-dependent Clp protease proteolytic subunit |
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| Protein accession | YP_001094633 |
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| Protein GI | 127513436 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
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| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00013558 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.581146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAAATG CGCCAGAATC AGTACTGAAT GCACTTGTGC CTATGGTCGT TGAACAAACT
GCCAAAGGGG AACGTTCATA TGATATTTAT TCTCGTCTGC TCAAAGAGAG GGTGATCTTT
CTCGTTGGTC AGGTTGAAGA GCATATGGCT AACCTGATTG TGGCTCAGCT ACTGTTCCTC
GAGTCTGAGA GCCCAGATAA AGATATCTAT CTTTATATTA ACTCTCCTGG TGGCTCGGTC
ACTGCGGGGA TGGCGATTTA TGATACCATG CAGTTTATTA AGCCAAATGT CAGCACAGTC
TGCATCGGTC AGGCCGCCAG TATGGGCGCC TTCCTGCTTG CCGGTGGTGC CAAGGGTAAG
CGTCACTGTC TGCCAAACTC ACGTGTAATG ATCCATCAGC CATTGGGTGG CTTCCAGGGC
CAAGCGTCTG ATATCGCGAT TCATGCACAA GAGATCTTGG GCATTAAGAA CAAGCTGAAC
CAGATGCTTG CCGACCATAC AGGCCAGCCG CTGGAAGTGA TCGAGCGCGA TACGGATCGT
GACAATTTCA TGAGTGCAAC CGAGGCCGCA GAGTACGGAT TGGTTGACTC TGTGCTCGAT
AAACGAGGCT GA
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| Protein sequence | MQNAPESVLN ALVPMVVEQT AKGERSYDIY SRLLKERVIF LVGQVEEHMA NLIVAQLLFL
ESESPDKDIY LYINSPGGSV TAGMAIYDTM QFIKPNVSTV CIGQAASMGA FLLAGGAKGK
RHCLPNSRVM IHQPLGGFQG QASDIAIHAQ EILGIKNKLN QMLADHTGQP LEVIERDTDR
DNFMSATEAA EYGLVDSVLD KRG
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