| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2507 |
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| Symbol | clpX |
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| ID | 4921353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2949498 |
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| End bp | 2950778 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640164098 |
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| Product | ATP-dependent protease ATP-binding subunit ClpX |
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| Protein accession | YP_001094632 |
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| Protein GI | 127513435 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
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| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000810133 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.623667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGCGACA ACAAAAGTAA CGGTGATAGC GGGAAACTGC TGTACTGCTC TTTTTGTGGA
AAGAGTCAGC ATGAGGTTCG TAAGCTCATC GCCGGCCCTT CTGTGTATGT ATGTGACGAG
TGTGTAGAGC TTTGCAACGA TATTATCCGT GAAGAGATTC GTGAGATATC GCCAAAGCAA
GATCAAGATA GATTACCTAC GCCACATGAG CTCAGAGCGC ATCTTGACGA CTATGTCATA
GGTCAAGAGA AGGCTAAGAA AGTCTTATCT GTTGCTGTAT ATAACCACTA TAAACGTTTA
AAGAATGCCA CCCCTAAAGA TGGTGTCGAG CTGGGCAAGA GTAACATCTT GCTGATCGGC
CCAACCGGTA GTGGTAAGAC GCTGCTTGCC GAGACCTTAG CTCGGTTCTT GAATGTGCCT
TTTACCATGG CCGATGCCAC CACCCTGACC GAAGCCGGTT ATGTGGGTGA GGATGTCGAG
AACATCATTC AGAAGCTGCT GCAGAAGTGT GACTACGATG TCGAGAAGGC CCAGCGTGGT
ATCGTCTATA TCGATGAGAT CGATAAGATT AGCCGCAAGT CAGATAACCC ATCGATCACC
CGCGACGTGT CCGGTGAAGG TGTGCAGCAG GCCCTGCTGA AGCTAATCGA AGGCACAGTG
GCTGCCGTAC CGCCCCAAGG CGGACGTAAG CATCCTCAGC AGGAGTTCTT GCAGGTCGAT
ACCTCTAAGA TCCTCTTCAT CTGTGGCGGC GCCTTTGCGG GCCTGGAGAA GGTGATCGAG
CAGCGTTCCC ATGTCGGTAC CGGCATAGGT TTCGGTGCCG AGGTGAAGGG CGAGGCCGAT
AAGGCGACTA TCTCAGACGT GTTGCTGCAG GTTGAGCCTG AAGATCTGGT GAAATATGGT
TTGATCCCTG AATTCATCGG TCGTCTGCCT GTGCTGGCTA CCCTGGCCGA GCTGGATGAA
GCTGCGCTGA TTCAGATCCT GTCTGAGCCA AAGAATGCGC TGACTAAGCA GTTTGCCGCC
CTGTTCGAGA TGGAAGGGGT TGAGCTCGAG TTCAGAGAAG ATGCGCTCAA GGCGATTGCG
CTGAAAGCGA TGGATCGTAA GACAGGTGCT CGCGGTCTGC GTTCAATCGT CGAAGGCATA
CTGCTGGACA TCATGTATGA CCTGCCATCA ACCGAGAACG TGGCCAAGGT GGTTATCGAT
GAGTCAGTGG TTAAGGGCGA GTCCGCTCCT ATCCTCATCT ACGAAGCCAA TGAGACGCAA
GCCGCGGTGG CTGAACAATA A
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| Protein sequence | MGDNKSNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIREISPKQ
DQDRLPTPHE LRAHLDDYVI GQEKAKKVLS VAVYNHYKRL KNATPKDGVE LGKSNILLIG
PTGSGKTLLA ETLARFLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG
IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV AAVPPQGGRK HPQQEFLQVD
TSKILFICGG AFAGLEKVIE QRSHVGTGIG FGAEVKGEAD KATISDVLLQ VEPEDLVKYG
LIPEFIGRLP VLATLAELDE AALIQILSEP KNALTKQFAA LFEMEGVELE FREDALKAIA
LKAMDRKTGA RGLRSIVEGI LLDIMYDLPS TENVAKVVID ESVVKGESAP ILIYEANETQ
AAVAEQ
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