Gene Shew_2505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2505 
Symbol 
ID4921351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2946482 
End bp2946754 
Gene Length273 bp 
Protein Length90 aa 
Translation table11 
GC content44% 
IMG OID640164096 
Producthistone family protein DNA-binding protein 
Protein accessionYP_001094630 
Protein GI127513433 
COG category[L] Replication, recombination and repair 
COG ID[COG0776] Bacterial nucleoid DNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000791734 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.581146 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAT CTGAACTAAT CGAGAAAATC GCTTCTGGTG CTGATATCTC TAAAGCGGCC 
GCTGGTCGTG CTCTAGATTC TTTTATTTCT GCTGTGACTG ATGGCTTAAA AGATGGCGAT
AAAATCTCTC TAGTTGGTTT TGGTACTTTT GAAGTGCGTC AACGCGCAGA GCGTACTGGT
CGCAACCCAC AGACTGGTAA AGAGATCAAG ATTGCTGCAG CAAACATTCC AGCATTCAAG
GCCGGTAAAG CACTTAAAGA CGCTGTAAAC TAA
 
Protein sequence
MNKSELIEKI ASGADISKAA AGRALDSFIS AVTDGLKDGD KISLVGFGTF EVRQRAERTG 
RNPQTGKEIK IAAANIPAFK AGKALKDAVN