Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2500 |
Symbol | |
ID | 4921346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2939915 |
End bp | 2940805 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640164091 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001094625 |
Protein GI | 127513428 |
COG category | [V] Defense mechanisms |
COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.170026 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAAA TTAAAATCTA TCAGGAAGAT CATATCCCCT CGCCCCTGAG CCGGATCTGG TCCGCCTTTA CCGACAACCC CTTCGCCTTT GCCGGGCTCT GGGCCGTCTG TTGTCTGCTG CTTCTGGCTC TATTTGGCCC GCTTATCGCC CCATATAGCC CTGAGCATCA AGACCCATTA GCGCTACTAC TGGCGCCCTC CTGGGAGCCC ACAGGCACTG TGGAGCACTT CCTCGGCACC GACGACTTGG GCCGCGACAT CTTCAGCCGC CTGCTCCATG GCGCCCACCT GACCTTCGGT ATGGCGCTGG CAATAGTTAT CACCGCCCTG CTGCTGGGTT TCATCATAGG CTCCATCTCG GGCATGATGA AGGGCCTCAA GTCGAGTATC TTGAGCCACC TGCTAGACGC TCTGCTGTCT ATCCCCTCGC TGCTGATGGC GATTCTAGTG GTGGCGGTCA CAGGACCAGG GCTTGGCAAC GTCTTCTGGG CCGTGGGCAT CGCCCTCACC CCGCAGTTTG TCCGCGCCAT TCACCAGGCG GTGCACGAAG AGTTACAGAA AGAGTATGTC ACCGCCGCTA GACTCGATGG TGCCAATAGT TTGCAGATCT TCTGGTATGT GATCCTGCCC AACATCATGG ACACCATGAT CATCCAGACC ACCTTAGGGA TCTCGGCCGC CATTTTGGAT ATCGCCGCGC TGGGCTTCCT CAACCTGGGG GCCCAGGCCC CTAGCCCGGA ATGGGGCGCC ATGGTATCTC AAGGCTTAGA TAATCTGCTC ACCGCTCCCT GGACGGTTAC CATACCCGGC GTCGCCATCC TCTGTAGCGT GCTAGCCATT AACCTGGTGG GAGACGGACT GCGCTCTGCC CTCTCGCCGA TTCGCTCCTA A
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Protein sequence | MPQIKIYQED HIPSPLSRIW SAFTDNPFAF AGLWAVCCLL LLALFGPLIA PYSPEHQDPL ALLLAPSWEP TGTVEHFLGT DDLGRDIFSR LLHGAHLTFG MALAIVITAL LLGFIIGSIS GMMKGLKSSI LSHLLDALLS IPSLLMAILV VAVTGPGLGN VFWAVGIALT PQFVRAIHQA VHEELQKEYV TAARLDGANS LQIFWYVILP NIMDTMIIQT TLGISAAILD IAALGFLNLG AQAPSPEWGA MVSQGLDNLL TAPWTVTIPG VAILCSVLAI NLVGDGLRSA LSPIRS
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