Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2440 |
Symbol | |
ID | 4921596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2867592 |
End bp | 2870846 |
Gene Length | 3255 bp |
Protein Length | 1084 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640164030 |
Product | acriflavin resistance protein |
Protein accession | YP_001094565 |
Protein GI | 127513368 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0608966 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000826173 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATCAGC AAGATCGACA CCAAGATAAT CAGCAGAGCC CAAAACGTCT GGGATTTTCC GGACGCCTGG CGGCCATGTT CCAGCTGAGC GCCATCACCC CCTTGCTGGC CCTGCTTGGC CTGCTACTGG GTCTGTTCGC CGTCATGGTG ACCCCAAAAG AGGAAGAGCC GCAGATAGAT GTCACCTTTG CCGACATCTA CATCCCCTTC CCCGGCGCCA CGCCGAGCGA GGTCGAGCAT CTGGTCACCC AGCCTATGGA GGAGGTGATC TCGCAGATCA AGGGGATAGA CACCCTCTAC TCCTTCTCAC AACCAGACGG CGCACTGATC ATCGCCATCT TCGAGGTGGG GATCCCGCGT AACGAGGCGA TCGTCAAGCT CTACAATCAG GTCTATTCCA ACAAGGACAA GGTTGCCAGC CAGGCAGGCG TGGGCGAGCC ACAGATCAAG CCCCGCGGCA TCGACGATGT GCCCATCGTC AGCCTGACCC TATGGTCGAA AGACAAGGCG CAATCTGCCG AGCAGCTGAC CCATATCGCC AAGGGACTGG AGAGCGAGCT GAAACGCATT CCGGGCACCC GCGAGATCTA CAGCGTCGGT AGTCATGAGA TCAGCCTCAA CGTGCGGATC GATCCCGCCA AGATGAGCTT CTATGGCCTC ACCTACGACG ATATCAACCG TAGCCTGTCG AGCAATAACC ATGTCTCCAT GCCAGTATCT CTGGTGCAGG ATAATCAGGA GATCAAGGTA CAAACTGGAC AGTTTTTAAA ATCGAAACAA GAGGTTGAGC AGCTGGTTGT CGCCGTGTAT CAGGACGAGT CGGGCCAGAG CGCCCCCGTG TACCTTGGCG ATATCGCCAA GATTAGCCTC AACAGCGACA TCCCGACCCA GCACGCCTGG CACGGCGATA AGTCGGCCAT CTATCCTGCG GTCACCATCG CCATCGGCAA GCAGCCCGGC GAGAACGCCG TGGATATCGC CAATGTGATC CTCGAGCGCC TGGACAAGAT AGACAACATA CTGGTTCCCG ACGATGTGAA CATCACGGTC TCGCGCAACT ATGGTAAGAC GGCGGGCGAC AAGGCCAACA CCCTGATCCT CAAGCTGGTG TTTGCCACCT CGGCCGTGGT GATCTTGGTC TTCCTCACCA TGGGGCTACG CGAATCTGTA GTAGTGGGCA TCGCCATCAT CATCACCCTG GCGATCACCC TGTTTGCCTC CTGGGCCTGG GGCTTTACCC TTAACCGTAT CTCGTTGTTC GCCTTGATCT TCTCTATCGG CATACTCGTA GATGACGCCA TCGTGGTGGT GGAGAACATC CACAGGCATA TGGCGCTGGG CAAACGCTCC TTCGTGGAGC TGATCCCCGT CGCCGTAGAT GAGGTGGGCG GCCCGACAAT ATTGGCGACC TTTACCGTGA TCGCCGCGCT GATGCCCATG GCCTTCGTAT CCGGCCTCAT GGGCCCCTAC ATGAGCCCGA TCCCCATCAA TGCCAGCATG GGGATGCTGA TCTCTCTGGC CATCGCCTTC ATCGTCACCC CTTGGCTGGC CACTAAGCTG CTCAAGGGTC ATCAACACCA AGGTGGTGAT GGCGAGCATG ATGTGGACGA TCGCATGCTG AGGCTGTTTA CTAGGCTGAT CTCCCCCTTC GTCAGAGGCA AACAAGCCGG TAAGGCGAGG ATTGGCCTGG GCGCCGCCAT CGCCCTGCTG ATCATGATCG CCGTGTCCCT GCCCGTGGGT CAGTTGGTGG TGCTCAAGAT GCTGCCCTTC GACAACAAGT CGGAGTTTCA GGTGATGCTG GATATGCCAG AAGGCACGCC GGTTGAACAG ACCCAGCGCG TACTCAAGGC CCTGGCCATG GAGCTGGATA AGGTCGAAGA GGTAGACAAC TACCAGCTCT ACGCCGGCAC CGCCGCGCCG ATGAACTTTA ACGGCCTGGT GCGTCACTAC TTCCTCAGAC AGAGTCAGGA GCTGGGCGAT ATTCAGGTTA ACCTGGTTGA TAAAGGCGAT CGCGACAGAG ACAGTCACAG CATAGCTTCC GAGGTGCGCC GCGCGCTGCA GGCCACCGCC AAGCAATACC ATGCCAACGT CAAGGTGGTC GAAGTGCCCC CAGGCCCACC CGTGTGGTCG CCCATCCTGG CCGAGGTCTA TGGCCCTAAC GCCGAGATGC GTGAGACAGC AGCCAATGCA CTGCAGCAGC TGTTCCACGA TACTCAGGAT GTGGTGGATA TCGACATCTA CCTGCCGGCC GCGCAGCAGA AATGGCAGGT TAATATCGAC CGCGCCAAGG CCAGCCTGAT GGGCGTGCCC TACAGCAATA TCGTCGATCT GGTGGCCACC TCGGTGGGCG GCAAGGCGGT GAGCTACCTG CATAAGCCGA ATCAAAAGTC GCCTGTGCCT ATCAAGCTTC AGCTGGAGGA AGGCGCCAAG GTGGATCTCG AGCAGGTGCT TAACCTCAGG CTCACCAATG CCTCGGGTAA CTCTGTGCCC GTCTCTGAGC TGATCACCAT ACACAAGCGA GCCATAGACG CGCCTATCAT ACGCAAGAAC ATGATCCCTA TGATCATGGT GGTCGCCGAC ATGGCGGGCC CGCTGGACAG CCCACTCTAT GGCATGTTCG AGATCGCCGG CAGTATCAAT CAAGAGGGTG GTCTGGGCTT CGATCAACAC TATGTCAACC AACCCTCAGG GCTGGACAGC ATCGCCGTGC TCTGGGACGG CGAGTGGAAG ATCACCTATG AGACCTTCAG AGACATGGGT ATCGCCTATG GCGTGGGCAT GATCGCCATC TACCTCCTGG TAGTGGGTCA GTTCCGCTCC TACAGCGTGC CGCTGATCAT CATGGCGCCT ATTCCGCTCA CCATCATAGG GGTGATGCCG GGCCATGCCC TGCTGGGGGC GCAATTTACC GCCACCTCTA TGATAGGCAT GATCGCCCTG GCGGGCATTA TCGTGCGTAA CTCCATCCTC TTGGTGGACT TTATTAATCA GGAAACCGCC GCGGGTGTGC CCTTCGAGCA GGCGGTGATC CATTCTGGCG CCGTCAGGGC CAAGCCCATC ATGTTGACGG GACTGGCGGC CATGATAGGT GCCCTGTTCA TCTTAGATGA TCCGATCTTC AACGGCCTGG CCATCAGCCT GATCTTCGGC ATCTTGGTAT CAACCCTGTT AACCCTGGTG GTGATCCCCG TGCTCTATTA CGCCGTGATG CGTCACCGCC CCGAATATTT TGCCGCGGTT AATCCGCAAT CTTAA
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Protein sequence | MNQQDRHQDN QQSPKRLGFS GRLAAMFQLS AITPLLALLG LLLGLFAVMV TPKEEEPQID VTFADIYIPF PGATPSEVEH LVTQPMEEVI SQIKGIDTLY SFSQPDGALI IAIFEVGIPR NEAIVKLYNQ VYSNKDKVAS QAGVGEPQIK PRGIDDVPIV SLTLWSKDKA QSAEQLTHIA KGLESELKRI PGTREIYSVG SHEISLNVRI DPAKMSFYGL TYDDINRSLS SNNHVSMPVS LVQDNQEIKV QTGQFLKSKQ EVEQLVVAVY QDESGQSAPV YLGDIAKISL NSDIPTQHAW HGDKSAIYPA VTIAIGKQPG ENAVDIANVI LERLDKIDNI LVPDDVNITV SRNYGKTAGD KANTLILKLV FATSAVVILV FLTMGLRESV VVGIAIIITL AITLFASWAW GFTLNRISLF ALIFSIGILV DDAIVVVENI HRHMALGKRS FVELIPVAVD EVGGPTILAT FTVIAALMPM AFVSGLMGPY MSPIPINASM GMLISLAIAF IVTPWLATKL LKGHQHQGGD GEHDVDDRML RLFTRLISPF VRGKQAGKAR IGLGAAIALL IMIAVSLPVG QLVVLKMLPF DNKSEFQVML DMPEGTPVEQ TQRVLKALAM ELDKVEEVDN YQLYAGTAAP MNFNGLVRHY FLRQSQELGD IQVNLVDKGD RDRDSHSIAS EVRRALQATA KQYHANVKVV EVPPGPPVWS PILAEVYGPN AEMRETAANA LQQLFHDTQD VVDIDIYLPA AQQKWQVNID RAKASLMGVP YSNIVDLVAT SVGGKAVSYL HKPNQKSPVP IKLQLEEGAK VDLEQVLNLR LTNASGNSVP VSELITIHKR AIDAPIIRKN MIPMIMVVAD MAGPLDSPLY GMFEIAGSIN QEGGLGFDQH YVNQPSGLDS IAVLWDGEWK ITYETFRDMG IAYGVGMIAI YLLVVGQFRS YSVPLIIMAP IPLTIIGVMP GHALLGAQFT ATSMIGMIAL AGIIVRNSIL LVDFINQETA AGVPFEQAVI HSGAVRAKPI MLTGLAAMIG ALFILDDPIF NGLAISLIFG ILVSTLLTLV VIPVLYYAVM RHRPEYFAAV NPQS
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