Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2416 |
Symbol | |
ID | 4921746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 2836447 |
End bp | 2837541 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164006 |
Product | chorismate synthase |
Protein accession | YP_001094541 |
Protein GI | 127513344 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0082] Chorismate synthase |
TIGRFAM ID | [TIGR00033] chorismate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGGTA ACAGTATCGG TCAAAATTTT GTGGTGACGA CTTTTGGTGA GAGCCATGGT AAAGCCTTAG GTTGTATTAT CGATGGCTGC CCTCCGGGTC TGGCGATCGA TGAAGCCGAT ATGCAGCATG ATCTCGACAG GCGCCGTCCG GGCACTTCGC GTTATACCAC AGCCAGACGT GAGCCGGATC AGGTGAAGAT CCTCTCGGGG GTGTTCGAGG GGCAGACCAC TGGTACTTCC ATCGGCTTAG TGATCGAGAA TACCGATCAA CGTAGCCAGG ATTACTCCAA TATCAAAGAT CAGTTCCGTC CAGGTCACGC CGACTACACT TATCAGCAAA AGTATGGCCT GCGAGATTAT CGCGGTGGCG GGCGCTCATC GGCGCGGGAA ACCGCCATGC GTGTAGCGGC CGGCGCTGTG GCCAAGAAGT ATCTAAAACA GGTGCACGGC ATAGAGATCA AGGGTTATCT GTCGCAGCTT GGGCCTATCT GCGCCGAGAT ACTGGATTTT GATCAGGTTG AGCACAATGC CTTCTTCTTT CCCGATGCTG CCAAGCTCGA GCAACTCGAC GAGTATATGC GTGAGCTGAA AAAGAGCGGT GACTCCATAG GCGCTAAGGT GTCTGTGGTG GCGACTAATG TGCCTGTGGG ACTGGGCGAG CCGGTGTTCG ACCGTCTCGA TGCCGATATC GCTCACGCCC TGATGGGGAT CAATGCCGTT AAAGGGGTGG AGATTGGCGA TGGCTTTGCC GTGGTAAACC AGAAGGGCTC AGAGCACAGA GATCTGATGT CGCCCGAGGG GTTCGCCTCT AACCATGCGG GCGGTATTCT CGGCGGGATC TCGTCGGGTC AGCCAATCGT CGCGCATATC GCCATGAAGC CGACTTCCAG CATCAGCGTG CCGGGAGAGA GTATGACGGT GCAGGGTGAG CGCGCCGAGG TGGTCACTAA GGGACGTCAC GACCCCTGCG TAGGCATTCG CGCCGTGCCG ATTGCCGAGG CCATGTTGGC CATCGTCTTG ATGGATCATC TTCTCAGACA CAGGGCACAA AACATGAATG TTGAGAGCAT CACCCCAGTG ATTGGGATGA AGTAA
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Protein sequence | MSGNSIGQNF VVTTFGESHG KALGCIIDGC PPGLAIDEAD MQHDLDRRRP GTSRYTTARR EPDQVKILSG VFEGQTTGTS IGLVIENTDQ RSQDYSNIKD QFRPGHADYT YQQKYGLRDY RGGGRSSARE TAMRVAAGAV AKKYLKQVHG IEIKGYLSQL GPICAEILDF DQVEHNAFFF PDAAKLEQLD EYMRELKKSG DSIGAKVSVV ATNVPVGLGE PVFDRLDADI AHALMGINAV KGVEIGDGFA VVNQKGSEHR DLMSPEGFAS NHAGGILGGI SSGQPIVAHI AMKPTSSISV PGESMTVQGE RAEVVTKGRH DPCVGIRAVP IAEAMLAIVL MDHLLRHRAQ NMNVESITPV IGMK
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